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Report for CCDS16569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16569.1 Public Mus musculus 2 Tmco5 23 108 98 CCDS HistoryNCBI Gene:67356Re-query CCDS DB by CCDS ID:16569.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028834.2 ENSMUSP00000028834.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028834.2Link to Ensembl Protein Viewer:ENSMUSP00000028834.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028834Re-query CCDS DB by Protein ID:ENSMUSP00000028834
Original member NCBI NM_026104.4 NP_080380.1 Updated not alive Link to Nucleotide Sequence:NM_026104.4Link to Protein Sequence:NP_080380.1Re-query CCDS DB by Nucleotide ID:NM_026104Re-query CCDS DB by Protein ID:NP_080380
Current member NCBI NM_026104.5 NP_080380.1 Accepted alive Link to Nucleotide Sequence:NM_026104.5Link to Protein Sequence:NP_080380.1Re-query CCDS DB by Nucleotide ID:NM_026104Re-query CCDS DB by Protein ID:NP_080380Link to BLAST:NP_080380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080380.1 303 Q9D9D5-1 303 100% 0 0

Chromosomal Locations for CCDS 16569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 116879284 116879318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116880236 116880385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116880796 116880919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116882465 116882515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116883215 116883286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116886250 116886306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116886730 116886789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116887238 116887302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116888254 116888311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116890105 116890145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 116892113 116892311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGAAGAACAGAAGGAAAATCAGCTGGACTATGAGTCAGAAAAAATGGAAATCTTGAGATTGGCCCAAT
CAAAGAAGAACATTATCAGCTTGAACATGGACCTCGAAAGGGATATGCAGAGAATAGATGAAGCCAACCA
GGAGCTGCTTCTCGAGATACAAGAAAAAGAAAATGAAATCCAGAGGCTAGAACATGAGATCACCCAGACT
GGGAACCCTGCAGAAGACGAGGAGTGGGAGAAGGAAAACTATACTGTGATGGAAAGAGAACAAGCTCTGC
AGGAGCTGGAGGAAGAAACAGCCAGATTGGAGAGGAAGAATGAGACTCTGGTCCACAGTATTTCAGAACT
TCAGAGAAAGCTTACAAGAAAATCACAAAAGGTAATCAGGTATGAACAAGGTGATCTAGAAACAACCCCA
GAAGAGTCCAAGGTTAAACTACAACAGTTGGAGTCTTCCTGTGCAGACCAGGAGAAGGAGCTCGGCAAGA
TAATGGAAGACTATGTGTTTGTGTCTCAGCTCTGTGAAGATCAAGCTCTCTGCATAAAGAAGTACCAGGA
AGCTTTGAAGAGGATAGAAGAAGAACTAGAAACTGGATACCTTGAGAGAGAAGTATCAAAAGTCTTAAGC
ATGGATTCTGAGAGAGAAAGGAGTACGAGCCTAAATAAGATGGATGGCTTCATCAGTAAAGGGGCACTGA
GGTTCAGTAAAAGTATTTTTCGTTCCCTCTTGTTCTCCACGCTGTTTTTCATCAGATTGCTGGGATACCT
GATCTTCCATTTAAGTTTTATAAATCCCGACCTCCTGGTCAACGCGCTGCCTAAGATACTGAGCAGGGAC
GTCTTGTGGAAGCTGAGATGTTTCCTCTTCCCATCTCTCACGCTTGAGACAGAAGACATGTTACCTCACT
GA

Translation (303 aa):
MEEQKENQLDYESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLEIQEKENEIQRLEHEITQT
GNPAEDEEWEKENYTVMEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQGDLETTP
EESKVKLQQLESSCADQEKELGKIMEDYVFVSQLCEDQALCIKKYQEALKRIEEELETGYLEREVSKVLS
MDSERERSTSLNKMDGFISKGALRFSKSIFRSLLFSTLFFIRLLGYLIFHLSFINPDLLVNALPKILSRD
VLWKLRCFLFPSLTLETEDMLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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