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Report for CCDS49908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49908.1 Public Mus musculus 16 Paxbp1 23 108 98 CCDS HistoryNCBI Gene:67367Re-query CCDS DB by CCDS ID:49908.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118522.7 ENSMUSP00000113835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118522.7Link to Ensembl Protein Viewer:ENSMUSP00000113835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118522Re-query CCDS DB by Protein ID:ENSMUSP00000113835
Original member Current member NCBI NM_026110.2 NP_080386.3 Accepted alive Link to Nucleotide Sequence:NM_026110.2Link to Protein Sequence:NP_080386.3Re-query CCDS DB by Nucleotide ID:NM_026110Re-query CCDS DB by Protein ID:NP_080386Link to BLAST:NP_080386.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080386.3 919 P58501-1 919 100% 0 0

Chromosomal Locations for CCDS 49908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91015061 91015178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91016846 91017000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91019163 91019309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91022051 91022117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91022669 91022745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91023338 91023459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91025147 91025291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91025496 91025695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91027030 91027145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91027230 91027329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91030433 91030556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91034098 91034287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91034800 91035017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91035919 91036022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91036468 91036689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91037242 91037418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91042553 91042681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91044006 91044354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGTTCCGAAAGGCCCGGCGGGTGAACGTGCGCAAGCGGAACGACTCGGAGGAGGAGGAGCGGGAGCGCG
ATGAGGAGCAGGAGCCGCCACCGTTGCTGCCCCCGCCGGCCTCGGGAGAAGAGCCCGGCCCTGGCGGCGG
CGACCGGGCCCCCGCGGGGGAGTCGCTCCTGGGCCCGGGGCCGCTGCCGCCGCCGCCCTCCGCGCACCAC
CCGGGCCTCGGCGCTGAGGCCGGGGGCGGCATCTCCGGCGGCGCGGAGCCCGGCAATGGGCTGAAGCCGC
GCAAGAGGCCTCGCGAGAACAAAGAGGTGCCCAGGGCCAGCCTGCTCAGCTTCCAAGACGAGGAGGAAGA
AAATGAAGAAGTGTTCAAAGTAAAGAAATCAAGTTACAGCAAAAAGATAGTTAAATTGCTTAAGAAAGAA
TATAAAGAAGACCTTGAAAAATCAAAGATCAAGACAGAACTCAACACAGCAGCTGACAGTGACCAGCCTC
TGGACAAAACGTGTCATGCTAAGGACACAAACCCAGAAGATGGAGTTGTCATCAGCGAGCACGGTGAGGA
TGAAATGGACATGGAGAGCGAGAAGGAGGAGGAGAAGCCCAAGGCCGGGGGCGCCTTCTCCAATGCTCTG
TCTTCCCTGAACGTGCTCCGCCCAGGAGAAATCCCAGATGCAGCTTTCATACATGCTGCAAGAAAGAAGC
GACAACTGGCCCGGGAGCTGGGCGACTTCACGCCTCACGACAGTGAGCCTGGCAAAGGCCGCCTCGTCCG
CGAGGACGAGAATGATGCCAGCGACGATGAGGACGATGATGAGAAGCGCCGGATCGTTTTTTCTGTGAAG
GAAAAGTCACAAAGACAAAAGATCGCTGAGGAGATAGGTATTGAGGGGAGTGACGATGACGCGTTAGTAA
CTGGAGAGCAAGACGAGGAGCTCAGCCGCTGGGAGCAGGAGCAGATTAGAAAAGGAATTAACATCCCTCA
GGTTCAAGCAAGTCAGCCCAGTGAAGTGAATGTGTACTACCAGAACACCTACCAGACAATGCCTTACGGT
GCATCCTATGGCATACCGTATAGTTACACAGCCTATGGATCATCAGATGCCAAGTCTCAAAAAACAGATA
ATACAGTCCCTTTCAAAACTCCCAGTAATGAGATGGCTCCCGTTACTATTGATTTGGTAAAGAGACAGCT
TAAAGACAGGTTGGACTCCATGAAAGAATTGCACAAAACCAATCAACAGCAGCATGAAAAACATCTGCAA
AGCCGAGTGGACTCCACCAGGGCTATTGAGAGATTAGAAGGGTCTTCTGGGGGTATTGGTGAACGGTATA
AATTTTTGCAAGAAATGCGAGGGTATGTCCAAGACTTGCTTGAGTGTTTCAGTGAAAAGGTGCCACTGAT
TAATGAACTTGAATCAGCAATACATCAGCTGTACAAACAGCGAGCTTCCCGCCTTGTCCAAAGACGACAA
GATGATATTAAAGATGAATCTTCGGAGTTTTCAAGCCATTCAAATAAAGCTTTGATGGCACCAAATCTTG
ATTCCTTTGGACGTGATCGGGCACTTTATCAAGAACATGCAAAACGTCGGATTGCAGAGCGGGAAGCCAG
GAGGACTCGCCGTAGGCAAGCCAGAGAGCAAACCGGTCAGATGGCAGATCACCTGGAAGGCCTGTCCAGT
GATGATGAAGAGACGTCTACAGATATTACTAATTTCAATCTGGAGAAAGATCGAATTTTGAAAGAGTCTA
GCAAAGTTTTTGAAGATGTCCTTGAGAGTTTCTATTCAATTGACTGCATTAAAGCACAGTTTGAAGCATG
GCGTTCAAAATACTACATGTCCTATAAGGATGCTTATATTGGTCTTTGTCTGCCCAAACTGTTCAACCCC
CTAATCAGACTTCAGCTTCTCACCTGGACTCCTCTTGAGGCAAAATGCCGTGACTTTGAAACCATGCTGT
GGTTTGAATCTCTGCTGTTCTATGGCTGTGAAGACCGAGAGCAGGAGAAGGATGAGGCTGACGTTGCTCT
GCTGCCCACCATTGTGGAGAAGGTCATTCTCCCCAAGCTGACAGTGATAGCTGAAACCATGTGGGATCCC
TTTTCTACAACACAGACTTCAAGGATGGTTGGAATCACAATGAAATTAATAAATGGCTACCCCTCAGTAG
TCAATGCAGACAATAAAAACACGCAGGTATACCTTAAAGCTCTTTTACTGAGGATGAGAAGAACTTTAGA
TGATGATGTATTTATGCCCCTATATCCCAAAAATGTCTTAGAAAATAAAAATTCTGGGCCTTACTTATTT
TTTCAACGACAGTTTTGGTCGTCTGTTAAGCTATTGGGAAATTTTCTTCAGTGGTATGGCATTTTCTCAA
ACAAAACTCTTCAGGAGTTATCAATAGATGGCTTGTTAAACAGATACATCCTTATGGCTTTTCAGAACTC
AGAATACGGAGATGACAGCATCAGAAAAGCCCAAAATGTAATCAACTGTTTCCCTAAACAGTGGTTTGTG
AATCTGAAAGGAGAAAGAACTATTTCTCAGTTAGAAAATTTTTGCCGATATCTTGTACATTTAGCAGATA
CAATTTACAGGAACAGTATTGGGTGCTCTGATGTGGAAAAAAGAAATGCAAGGGAAAATATAAAACAGAT
AGTAAAACTTCTTGCAAGCGTTCGGGCTTTGGATCACGCTATATCTGTTGCAAGTGACCACAATGTGAAG
GAAGTCAAGTCTCTGATTGAAGGAAAATAG

Translation (919 aa):
MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPASGEEPGPGGGDRAPAGESLLGPGPLPPPPSAHH
PGLGAEAGGGISGGAEPGNGLKPRKRPRENKEVPRASLLSFQDEEEENEEVFKVKKSSYSKKIVKLLKKE
YKEDLEKSKIKTELNTAADSDQPLDKTCHAKDTNPEDGVVISEHGEDEMDMESEKEEEKPKAGGAFSNAL
SSLNVLRPGEIPDAAFIHAARKKRQLARELGDFTPHDSEPGKGRLVREDENDASDDEDDDEKRRIVFSVK
EKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPSEVNVYYQNTYQTMPYG
ASYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMAPVTIDLVKRQLKDRLDSMKELHKTNQQQHEKHLQ
SRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQ
DDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGQMADHLEGLSS
DDEETSTDITNFNLEKDRILKESSKVFEDVLESFYSIDCIKAQFEAWRSKYYMSYKDAYIGLCLPKLFNP
LIRLQLLTWTPLEAKCRDFETMLWFESLLFYGCEDREQEKDEADVALLPTIVEKVILPKLTVIAETMWDP
FSTTQTSRMVGITMKLINGYPSVVNADNKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLF
FQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIRKAQNVINCFPKQWFV
NLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAISVASDHNVK
EVKSLIEGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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