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Report for CCDS40138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40138.1 Public Mus musculus 7 Qprt 23 108 98 CCDS HistoryNCBI Gene:67375Re-query CCDS DB by CCDS ID:40138.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032912.5 ENSMUSP00000032912.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032912.5Link to Ensembl Protein Viewer:ENSMUSP00000032912.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032912Re-query CCDS DB by Protein ID:ENSMUSP00000032912
Original member Current member NCBI NM_133686.1 NP_598447.1 Accepted alive Link to Nucleotide Sequence:NM_133686.1Link to Protein Sequence:NP_598447.1Re-query CCDS DB by Nucleotide ID:NM_133686Re-query CCDS DB by Protein ID:NP_598447Link to BLAST:NP_598447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598447.1 299 Q91X91 299 100% 0 0

Chromosomal Locations for CCDS 40138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127108023 127108241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127108334 127108465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127108709 127109244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127121973 127121985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGACCCTGAAGGCCTGCAGCTCCTGTTACCCCCTACAACCTTGGCAGCCCTGGCGAACAGCTGGCTGC
AAGAGGACTGCCCGGGCCTCAATTTTGCATCCTTGGTTACCGGGTCGGCACCCTCGCAGGCTGTGCTGTG
GGCCAAATCTCCTGGGGTTCTGGCAGGGCGACCCTTCTTTGACGCCATCTTCACTCAACTCAACTGCCAA
GTGTCCTGGTTCCTCCCGGAGGGATCGAAGCTGGTACCTGTGGTCAAGGTGGCAGAGGTCAAGGGACCTG
CCCACCACCTGCTCTTGGGGGAACGGGTGGCTCTTAACACCCTGGCCCGCTGCAGTGGGATTGCCAGCGC
GGCAGCGACAGCTGTGGAGGTGGCCAGGAGCACCGGCTGGACTGGACACGTGGCGGGCACGAGGAAGACG
ACACCTGGGTTCCGACTGGTGGAGAAGTATGGGCTCCAAGTAGGCGGGGCAGCATGCCACCGCTACGACC
TGGGAGGGATGGTGATGGTGAAAGACAACCATGTAGTGGCGGCCGGCAGCATGGAAAGGGCAGTGCTGAA
GGCTCGGCAGGCAGCCGGGTTTTCCCTGAAGGTAGAGGTGGAATGTAGCAGCCTGGAGGAGGCCTTTCGG
GCAGCAGAGGCTGGGGCTGACCTGGTAATGCTGGACAACTTTAAGCCTGAGGAGCTGCACCCCACAGCAG
CTACACTTAAAGCCAGATTCCCCAGCGTGTCGGTGGAAGCCAGTGGGGGCGTCACACTGGACAACCTCAC
CCAGTTCTGTGGGACACACATTGACGTCATCTCGTTGGGAATGCTGACCCAGGCTGCTCCAGCCCTGGAT
TTTTCCCTCAAACTGTTTGCTGAAGGAGATACCCCAGTGCCTCACGCTCGCCGGTTCTAA

Translation (299 aa):
MDPEGLQLLLPPTTLAALANSWLQEDCPGLNFASLVTGSAPSQAVLWAKSPGVLAGRPFFDAIFTQLNCQ
VSWFLPEGSKLVPVVKVAEVKGPAHHLLLGERVALNTLARCSGIASAAATAVEVARSTGWTGHVAGTRKT
TPGFRLVEKYGLQVGGAACHRYDLGGMVMVKDNHVVAAGSMERAVLKARQAAGFSLKVEVECSSLEEAFR
AAEAGADLVMLDNFKPEELHPTAATLKARFPSVSVEASGGVTLDNLTQFCGTHIDVISLGMLTQAAPALD
FSLKLFAEGDTPVPHARRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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