NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20708.1 Public Mus musculus 6 Ergic2 23 108 98 CCDS HistoryNCBI Gene:67456Re-query CCDS DB by CCDS ID:20708.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136008.7 ENSMUSP00000120456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136008.7Link to Ensembl Protein Viewer:ENSMUSP00000120456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136008Re-query CCDS DB by Protein ID:ENSMUSP00000120456
Original member Current member NCBI NM_026168.4 NP_080444.1 Accepted alive Link to Nucleotide Sequence:NM_026168.4Link to Protein Sequence:NP_080444.1Re-query CCDS DB by Nucleotide ID:NM_026168Re-query CCDS DB by Protein ID:NP_080444Link to BLAST:NP_080444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080444.1 377 Q9CR89-1 377 100% 0 0

Chromosomal Locations for CCDS 20708.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 148181677 148181739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148181888 148181970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148183046 148183208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148188033 148188130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148189486 148189584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148190830 148190885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148195195 148195290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148195998 148196099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148199356 148199396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148201416 148201486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148202496 148202542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148204776 148204884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148206533 148206638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGAGGCGTCTGAATCGGAGAAAAACCTTAAGTTTGGTGAAAGAGTTAGATGCCTTTCCCAAGGTTCCTG
ACAGCTATGTGGAGACGTCAGCCAGTGGGGGAACAGTTTCTCTAATAGCATTTACCACTATGGCTTTATT
AACAATAATGGAATTCTCAGTCTATCAAGATACATGGATGAAGTACGAATATGAAGTAGACAAGGATTTT
TCTAGCAAGTTGCGAATCAACATAGACATTACTGTTGCCATGAAGTGTCACTATGTTGGAGCAGATGTAC
TGGATTTAGCAGAGACCATGGTTGCTTCTGCAGATGGTCTGGCTTATGAACCAGCACTGTTTGACCTTTC
ACCCCAGCAGAGAGAGTGGCAGAGGATGCTGCAGCTGATTCAGAGTAGGCTGCAGGAAGAGCATTCCCTT
CAAGACGTGATATTCAAGAGTGCTTTTAAAAGTGCATCAACTGCACTGCCACCAAGGGAAGATGATTCAT
CACTGACTCCAGATGCGTGCAGAATCCATGGTCATCTCTATGTCAATAAAGTAGCAGGGAATTTTCACAT
AACTGTGGGCAAGGCAATCCCACATCCTCGAGGGCATGCACATTTGGCAGCACTTGTCAACCATGATTCT
TACAACTTTTCTCACAGAATAGATCATTTGTCTTTTGGAGAGCTTGTTCCGGGAATTATTAATCCTTTGG
ATGGAACTGAAAAGATTGCTGTAGATCACAACCAGATGTTCCAATATTTCATTACAGTTGTGCCAACAAA
GCTACACACATACAAGATCTCAGCAGATACCCATCAGTTCTCTGTGACAGAAAGGGAACGCATCATCAAC
CATGCTGCAGGCAGCCACGGCGTCTCTGGAATATTTATGAAATATGATCTCAGTTCTCTCATGGTGACAG
TCACTGAGGAACACATGCCTTTCTGGCAGTTTTTTGTAAGACTCTGTGGTATAATTGGAGGAATCTTTTC
AACAACAGGCATGTTACATGGAATTGGAAAATTTATAGTGGAAATAATTTGCTGTCGTTTCAGACTTGGA
TCCTACAAGCCTGTCCGTTCTGTCCCCTTTGCGGATGGCCACACAGACAACCACTTACCTCTTTTAGAGA
ACAACACACATTAG

Translation (377 aa):
MRRLNRRKTLSLVKELDAFPKVPDSYVETSASGGTVSLIAFTTMALLTIMEFSVYQDTWMKYEYEVDKDF
SSKLRINIDITVAMKCHYVGADVLDLAETMVASADGLAYEPALFDLSPQQREWQRMLQLIQSRLQEEHSL
QDVIFKSAFKSASTALPPREDDSSLTPDACRIHGHLYVNKVAGNFHITVGKAIPHPRGHAHLAALVNHDS
YNFSHRIDHLSFGELVPGIINPLDGTEKIAVDHNQMFQYFITVVPTKLHTYKISADTHQFSVTERERIIN
HAAGSHGVSGIFMKYDLSSLMVTVTEEHMPFWQFFVRLCGIIGGIFSTTGMLHGIGKFIVEIICCRFRLG
SYKPVRSVPFADGHTDNHLPLLENNTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH