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Report for CCDS25330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25330.1 Public Mus musculus 11 Cwc25 23 108 98 CCDS HistoryNCBI Gene:67480Re-query CCDS DB by CCDS ID:25330.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018685.8 ENSMUSP00000018685.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018685.8Link to Ensembl Protein Viewer:ENSMUSP00000018685.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018685Re-query CCDS DB by Protein ID:ENSMUSP00000018685
Original member Current member NCBI NM_026186.4 NP_080462.2 Accepted alive Link to Nucleotide Sequence:NM_026186.4Link to Protein Sequence:NP_080462.2Re-query CCDS DB by Nucleotide ID:NM_026186Re-query CCDS DB by Protein ID:NP_080462Link to BLAST:NP_080462.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080462.2 416 Q9DBF7-1 416 100% 0 0

Chromosomal Locations for CCDS 25330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97747355 97747469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97747961 97748122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97750872 97750961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97752570 97752763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97753216 97753279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97753905 97754032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97756151 97756220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97757573 97757809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97763209 97763381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97766425 97766442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGGAGGCGGAGACCTGAACCTGAAGAAGAGCTGGCACCCGCAGACCCTTCGCAATGTGGAGAAAGTGT
GGAAGGCGGAGCAGAAGCATGAAGCGGAGAGGAAGAAGATTGAGGAGTTGCAGCGAGAGCTCCGAGAGGA
GAGAGCGCGGGAGGAGATGCAGCGCTACGCTGAGGATGTTGGGGCTGTCAAGAAAAAAGAAGAAAAGTTG
GATTGGATGTACCAAGGTCCGGGTGGCATGGTGAACCGTGATGAGTACTTGCTGGGGCGCCCCATTGACA
AGTATGTTTTTGAGAAGATGGAGGAGAGGGAAGCTGGCTGCTCTTCTGAGACAGGACTCCTCCCAGGCTC
AATCTTTGCCCCGTCGGGCGCCAATTCCCTTCTTGACATGGCCAGCAAAATCCGGGAAGACCCTCTCTTC
ATCATAAGGAAGAAAGAGGAGGAGAAAAAAAGAGAAGTGCTGAACAATCCTGTGAAAATGAAGAAAATCA
AAGAGCTGTTGCAAATGAGCCTTGAGAAAAAGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGCACAG
GAAGCACAAACACAGAAGCTCCAGCAGCGGTGGCTCCAGCAGCGAGGATGAGCAGAGCCAGGCCCGGTCT
CAAAAGAAGATGGCAAATTCCTTTCCTGTTTTGTCCAAAGTCCCTGGATATGGCTTACAGGTGAGGGACT
CTGACCGGAACCGGGGGCTGCAGGGTTCTCTGGGTGAACAGAGGGCGATAAAGAACAATTCCCGGTCAAG
AAGCTCCTCACCCCCCAGGCATGCCAGCAAGAAGAGCACCAAGGAAGAGAGGCCCCGGGACAGGAGGTCT
CGATCCCCCAGCAGAAGGTCCCGGTCCCCAAGGCCCAGCAAACCGCATACCTCTAAGGTAAACAGGAAAG
AGAGAGACAGCCCATCACCTAAGAAGGAGGCCTACCAGAGGCGGCATGCTTCTGGGTACACCAGAAAACT
CTCAGCAGAGGAACTAGAGCGGAAACGGCAGGAGATGATGGAAAATGCCAAGTGGAGGGAGGAGGAGAGG
CTCAACACCCTCAAGAGGCACGCCAGGGAGGACGAGCGGGAGCACAGGCTGGAGAGGTTGGACTCTCGGT
CCGGCAAGTTCCTCCACCGCATGAAGCTGGAGAGTGCGTCGACCTCCTCCCTGGAGGACCGCGTGAAGCG
CAACATCCATTCCCTACAGCGGACGTCGGTGGCCCTGGAGAAGAACTTCATGAGGAGATGA

Translation (416 aa):
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEEKL
DWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEREAGCSSETGLLPGSIFAPSGANSLLDMASKIREDPLF
IIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKKEKKKKHRKHKHRSSSSGGSSSEDEQSQARS
QKKMANSFPVLSKVPGYGLQVRDSDRNRGLQGSLGEQRAIKNNSRSRSSSPPRHASKKSTKEERPRDRRS
RSPSRRSRSPRPSKPHTSKVNRKERDSPSPKKEAYQRRHASGYTRKLSAEELERKRQEMMENAKWREEER
LNTLKRHAREDEREHRLERLDSRSGKFLHRMKLESASTSSLEDRVKRNIHSLQRTSVALEKNFMRR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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