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Report for CCDS27889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27889.1 Public Mus musculus 15 Calcoco1 23 108 98 CCDS HistoryNCBI Gene:67488Re-query CCDS DB by CCDS ID:27889.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023818.10 ENSMUSP00000023818.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023818.10Link to Ensembl Protein Viewer:ENSMUSP00000023818.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023818Re-query CCDS DB by Protein ID:ENSMUSP00000023818
Original member Current member NCBI NM_026192.3 NP_080468.1 Accepted alive Link to Nucleotide Sequence:NM_026192.3Link to Protein Sequence:NP_080468.1Re-query CCDS DB by Nucleotide ID:NM_026192Re-query CCDS DB by Protein ID:NP_080468Link to BLAST:NP_080468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080468.1 691 Q8CGU1 691 100% 0 0

Chromosomal Locations for CCDS 27889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102707369 102707546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102708546 102708652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102709076 102709275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102709443 102709551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102709871 102709966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102710405 102710530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102710914 102711168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102711343 102711498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102713856 102713946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102715742 102715890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102716230 102716388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102717803 102717993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102718974 102719076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102719542 102719697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGGAAGAGTCATCACTAAGCCGGGCACCATCCCGGGGTGGAGTCAACTTCCTGAATGTGGCCCGCACCT
ACATCCCCAACACCAAGGTGGAATGTCACTACACTTTGCCTCCGGGTACCATGCCCAGTGCCAGTGACTG
GATTGGCATTTTTAAGGTGGAAGCTGCCTGCGTTCGAGATTATCACACGTTCGTGTGGTCCTCAGTGCCA
GAAAGTACAACTGATGGCTCCCCCACCCATGCCAGTGTCCAATTCCAAGCCAGCTACCTGCCCAAACCAG
GAGCCCAACTCTACCAGTTCCGGTATGTGAACCGCCAGGGCCGGGTGTGTGGGCAGAGCCCCCCCTTCCA
GTTCCGAGAGCCAAGGCCCATGGATGAGCTGGTGACCCTGGAGGAGGCTGATGGAGGCTCTGACATCCTG
TTGGTTGTCCCTAAGGCCACCGTGCTTCAGAACCAGCTGGATGAGAGCCAGCAGGAGCGGAATGACCTGA
TGCAGCTGAAGCTGCAGTTGGAGGATCAGGTGACAGAGCTGAGGAGCCGAGTGCAGGAGCTGGAGGCAGC
TCTGGCCACGGCCAGGCAGGAGCATTCGGAGCTCACCGAGCAGTACAAGGGGCTCTCCCGGTCCCATGGG
GAGCTCTCAGAAGAGAGGGACATCCTGAGCCAGCAGCAGGGAGACCATGTGGCCCGTATCCTGGAGTTAG
AGGATGACATCCAGACCATGAGTGACAAAGTGCTGATGAAGGAGGTGGAGCTGGACAGGGTTAGAGACAC
AGTGAAGGCCCTGACACGGGAACAAGAGAAGCTCCTGAGACAGCTGAAGGAATTCCAGGCAGACAAGGAG
CAGAGTGAGGCTGAATTACAAACGGTCCGAGAGGAGAACTGCTGCTTAAATACAGAGCTGGAGGAGGCCA
AGAGCCGGCAAGAAGAGCAAGGTGCTCAGGTCCAGCGACTGAAGGACAAGCTGGCCCACATGAAGGACAC
CCTGGGCCAAGCCCAGCAGAAAGTGGCCGAGCTGGAGCCCCTGAAAGAGCAGCTCCGAGGGGTCCAGGAA
CTTGCAGCCTCAAGCCAGCAGAAAGCGGCCCTCCTTGGGGAGGAGTTGGCCAGTGCAGCAGGAGCTAGAG
ACCGAACCATAGCTGAACTACACCGCAGCCGACTGGAGGTGGCTGAAGTCAACGGCCGACTGGCTGAGCT
CAGCCTGCACATGAAGGAGGAAAAGTGCCAGTGGAGCAAGGAGCGGACAGGGCTGCTGCAGAGCATGGAG
GCTGAAAAGGATAAGATCCTGAAGCTGAGTGCGGAGATCCTCCGACTGGAGAAGACGGTGCAGGAGGAGA
GGACCCAGAGTCACGTGTTCAAGACTGAGCTGGCCCGAGAAAAGGATTCTAGCCTGGTGCAGTTGTCAGA
GAGTAAGCGGGAGCTCACAGAGCTACGGTCAGCCCTCCGTGTGCTTCAGAAGGAGAAGGAGCAGTTGCAG
ACGGAGAAACAGGAACTGCTGGAGTACATGAGGAAGCTGGAGGCCCGCCTGGAGAAGGTGGCGGATGAGA
AGTGGACCGAAGATGCTGCCACAGAGGACGAGGAAGCCACTGCTGGGCTGAGCTGCCCTGCATCTCTGAC
AGACTCAGAGGACGAGTCCCCAGAAGACATGCGGCTCCCATCCTATGGCTTGTGTGAGAGTGGAAACACA
AGCTCCTCTCCTCCTGGGCCTCGGGAGCCTTCTTCTCTTGTTGTCATCAACCAACCAGCACCCATTGCTC
CCCAGTTCTCAGGTCCAGGGGAGGCCAGCAGCTCAGACTCGGAGGCTGAAGATGAGAAGTCAGTCCTGAT
GGCAGCGGTGCAGAGTGGGGGCGAGGAAGCCAGCCTCCTGCTTCCTGAGCTCGGCAGTGCCTTCTATGAC
GTGGCCAGTGCTTTTACAGTGAGTTCCCTGTCAGAGGCCAGCCCTGGGGTCCCAGCCAACCCTCCATGGA
AGGAGTGTCCCATCTGCAAGGAGCGCTTCCCTGCTGAGAGTGACAAGGACGCCCTAGAGGGCCACATGGA
TGGGCATTTCTTCTTCAGCACCCAGGACCCTTTCACCTTTGAGTGA

Translation (691 aa):
MEESSLSRAPSRGGVNFLNVARTYIPNTKVECHYTLPPGTMPSASDWIGIFKVEAACVRDYHTFVWSSVP
ESTTDGSPTHASVQFQASYLPKPGAQLYQFRYVNRQGRVCGQSPPFQFREPRPMDELVTLEEADGGSDIL
LVVPKATVLQNQLDESQQERNDLMQLKLQLEDQVTELRSRVQELEAALATARQEHSELTEQYKGLSRSHG
ELSEERDILSQQQGDHVARILELEDDIQTMSDKVLMKEVELDRVRDTVKALTREQEKLLRQLKEFQADKE
QSEAELQTVREENCCLNTELEEAKSRQEEQGAQVQRLKDKLAHMKDTLGQAQQKVAELEPLKEQLRGVQE
LAASSQQKAALLGEELASAAGARDRTIAELHRSRLEVAEVNGRLAELSLHMKEEKCQWSKERTGLLQSME
AEKDKILKLSAEILRLEKTVQEERTQSHVFKTELAREKDSSLVQLSESKRELTELRSALRVLQKEKEQLQ
TEKQELLEYMRKLEARLEKVADEKWTEDAATEDEEATAGLSCPASLTDSEDESPEDMRLPSYGLCESGNT
SSSPPGPREPSSLVVINQPAPIAPQFSGPGEASSSDSEAEDEKSVLMAAVQSGGEEASLLLPELGSAFYD
VASAFTVSSLSEASPGVPANPPWKECPICKERFPAESDKDALEGHMDGHFFFSTQDPFTFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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