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Report for CCDS27459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27459.1 Public Mus musculus 15 Kcnv1 23 108 98 CCDS HistoryNCBI Gene:67498Re-query CCDS DB by CCDS ID:27459.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022967.6 ENSMUSP00000022967.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022967.6Link to Ensembl Protein Viewer:ENSMUSP00000022967.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022967Re-query CCDS DB by Protein ID:ENSMUSP00000022967
Original member Current member NCBI NM_026200.3 NP_080476.2 Accepted alive Link to Nucleotide Sequence:NM_026200.3Link to Protein Sequence:NP_080476.2Re-query CCDS DB by Nucleotide ID:NM_026200Re-query CCDS DB by Protein ID:NP_080476Link to BLAST:NP_080476.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080476.2 503 Q8BZN2 503 100% 0 0

Chromosomal Locations for CCDS 27459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 45108974 45109485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45112890 45113419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45114171 45114640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGATCTGTCACCCCGCAACCGGCCGCTACTGGACTCGTCGTCGCTGGACAGCGGTTCTCTGACCTCAC
TGGACTCCAGTGTCTTCTGTAGCGAGGGCGAAGGGGAACCCTTGGCTCTGGGGGACTGCTTTACAGTCAA
CGTGGGCGGTAGCCGCTTCGTGCTCTCGCAGCAAGCTCTGTCCTGCTTCCCGCACACGCGCCTGGGCAAA
CTGGCCGTAGTGGTGGCCTCCTACCGCCGCCTGGGTGCCCTGGCTGCCGCCCCCAGCCCCCTGGAGCTTT
GCGATGATGCGAATCCGGTGGACAACGAGTACTTCTTTGATCGCAGCTCTCAGGCGTTCCGTTATGTCCT
GCACTACTATCGCACTGGTCGCCTGCATGTCATGGAGCAGCTCTGTGCGCTCTCCTTTCTTCAGGAGATC
CAGTACTGGGGCATAGATGAACTCAGCATTGACTCCTGCTGCAGGGACAGATACTTCAGAAGAAAGGAGC
TGAGTGAAACTCTTGACTTTAAGAAGGACACAGATGACCAGGAAAGTCAACATGAGAGTGAACAGGACTT
CTCAAAAGGACCTTGTCCCACTGTCCGACAAAAGCTCTGGGATATTCTGGAGAAACCTGGATCTTCCACA
GCAGCCCGGATCTTTGGAGTAATCTCCATCATTTTTGTGGCAGTGTCCATCGTCAACATGGCCCTGATGT
CAGCTGAGCTTAGCTGGCTCAACCTACAGCTGCTGGAGATCTTGGAGTATGTGTGCATCAGCTGGTTCAC
CGGGGAGTTCGTTCTGCGCTTCCTATGTGTGAAAGACAGGTGCCACTTCCTGAGGAAGGTTCCAAACATC
ATAGACCTCCTTGCCATCTTGCCCTTCTATATAACTCTTCTGGTGGAAAGCCTGAGCGGCAGCCACACCA
CACAAGAGCTGGAAAATGTGGGACGTCTGGTCCAGGTCTTGAGGCTCCTCAGAGCTCTGCGCATGCTGAA
ACTGGGAAGGCATTCTACAGGATTGCGCTCACTTGGGATGACAATCACTCAGTGCTATGAAGAAGTTGGC
CTACTGCTCCTGTTTCTATCTGTGGGGATTTCTATATTTTCAACAATAGAATACTTTGCAGAGCAAAGCA
TTCCTGATACAACCTTCACAAGTGTTCCTTGTGCATGGTGGTGGGCCACAACATCCATGACTACAGTAGG
ATATGGGGACATTAGACCAGACACCACCACAGGCAAAATCGTGGCCTTCATGTGTATTCTGTCAGGAATC
CTTGTCTTGGCCTTGCCTATTGCCATTATTAATGATCGATTCTCTGCTTGCTACTTCACCTTGAAACTCA
AGGAAGCAGCTGTGAGACAGCGTGAAGCTCTCAAGAAACTTACCAAGAATATAGCCACTGACTCATATAT
TAGTGTTAACTTGAGGGATGTCTATGCCCGGAGCATAATGGAGATGCTTCGATTAAAGGGCAGGGAGAGA
GCAAGTACTAGAAGCAGTGGTGGAGATGATTTCTGGTTTTAA

Translation (503 aa):
MDLSPRNRPLLDSSSLDSGSLTSLDSSVFCSEGEGEPLALGDCFTVNVGGSRFVLSQQALSCFPHTRLGK
LAVVVASYRRLGALAAAPSPLELCDDANPVDNEYFFDRSSQAFRYVLHYYRTGRLHVMEQLCALSFLQEI
QYWGIDELSIDSCCRDRYFRRKELSETLDFKKDTDDQESQHESEQDFSKGPCPTVRQKLWDILEKPGSST
AARIFGVISIIFVAVSIVNMALMSAELSWLNLQLLEILEYVCISWFTGEFVLRFLCVKDRCHFLRKVPNI
IDLLAILPFYITLLVESLSGSHTTQELENVGRLVQVLRLLRALRMLKLGRHSTGLRSLGMTITQCYEEVG
LLLLFLSVGISIFSTIEYFAEQSIPDTTFTSVPCAWWWATTSMTTVGYGDIRPDTTTGKIVAFMCILSGI
LVLALPIAIINDRFSACYFTLKLKEAAVRQREALKKLTKNIATDSYISVNLRDVYARSIMEMLRLKGRER
ASTRSSGGDDFWF


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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