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Report for CCDS16712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16712.1 Public Mus musculus 2 Bcl2l11 23 108 98 CCDS HistoryNCBI Gene:12125Re-query CCDS DB by CCDS ID:16712.1Re-query CCDS DB by GeneID:12125See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019281.13 ENSMUSP00000019281.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019281.13Link to Ensembl Protein Viewer:ENSMUSP00000019281.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019281Re-query CCDS DB by Protein ID:ENSMUSP00000019281
Original member Current member EBI ENSMUST00000103211.7 ENSMUSP00000099500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103211.7Link to Ensembl Protein Viewer:ENSMUSP00000099500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103211Re-query CCDS DB by Protein ID:ENSMUSP00000099500
Original member Current member NCBI NM_009754.3 NP_033884.1 Accepted alive Link to Nucleotide Sequence:NM_009754.3Link to Protein Sequence:NP_033884.1Re-query CCDS DB by Nucleotide ID:NM_009754Re-query CCDS DB by Protein ID:NP_033884Link to BLAST:NP_033884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033884.1 110 O54918-3 110 100% 0 0

Chromosomal Locations for CCDS 16712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 128128633 128128756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128147085 128147194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128158231 128158329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGCCAAGCAACCTTCTGATGTAAGTTCTGAGTGTGACAGAGAAGGTGGACAATTGCAGCCTGCTGAGA
GGCCTCCCCAGCTCAGGCCTGGGGCCCCTACCTCCCTACAGACAGAACCGCAAGCTTCCATACGACAGTC
TCAGGAGGAACCTGAAGATCTGCGCCCGGAGATACGGATTGCACAGGAGCTGCGGCGGATCGGAGACGAG
TTCAACGAAACTTACACAAGGAGGGTGTTTGCAAATGATTACCGCGAGGCTGAAGACCACCCTCAAATGG
TTATCTTACAACTGTTACGCTTTATCTTCCGTCTGGTATGGAGAAGGCATTGA

Translation (110 aa):
MAKQPSDVSSECDREGGQLQPAERPPQLRPGAPTSLQTEPQASIRQSQEEPEDLRPEIRIAQELRRIGDE
FNETYTRRVFANDYREAEDHPQMVILQLLRFIFRLVWRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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