NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27112.1 Public Mus musculus 14 Cpne6 23 108 98 CCDS HistoryNCBI Gene:12891Re-query CCDS DB by CCDS ID:27112.1Re-query CCDS DB by GeneID:12891See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074225.10 ENSMUSP00000073847.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074225.10Link to Ensembl Protein Viewer:ENSMUSP00000073847.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074225Re-query CCDS DB by Protein ID:ENSMUSP00000073847
Original member Current member EBI ENSMUST00000163767.7 ENSMUSP00000126493.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163767.7Link to Ensembl Protein Viewer:ENSMUSP00000126493.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163767Re-query CCDS DB by Protein ID:ENSMUSP00000126493
Original member Current member EBI ENSMUST00000171643.1 ENSMUSP00000128555.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171643.1Link to Ensembl Protein Viewer:ENSMUSP00000128555.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171643Re-query CCDS DB by Protein ID:ENSMUSP00000128555
Original member Current member NCBI NM_001136057.3 NP_001129529.1 Accepted alive Link to Nucleotide Sequence:NM_001136057.3Link to Protein Sequence:NP_001129529.1Re-query CCDS DB by Nucleotide ID:NM_001136057Re-query CCDS DB by Protein ID:NP_001129529Link to BLAST:NP_001129529.1
Original member Current member NCBI NM_001360193.1 NP_001347122.1 Accepted alive Link to Nucleotide Sequence:NM_001360193.1Link to Protein Sequence:NP_001347122.1Re-query CCDS DB by Nucleotide ID:NM_001360193Re-query CCDS DB by Protein ID:NP_001347122Link to BLAST:NP_001347122.1
Original member Current member NCBI NM_009947.4 NP_034077.1 Accepted alive Link to Nucleotide Sequence:NM_009947.4Link to Protein Sequence:NP_034077.1Re-query CCDS DB by Nucleotide ID:NM_009947Re-query CCDS DB by Protein ID:NP_034077Link to BLAST:NP_034077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129529.1 557 Q9Z140 557 100% 0 0
NP_001347122.1 557 Q9Z140 557 100% 0 0
NP_034077.1 557 Q9Z140 557 100% 0 0

Chromosomal Locations for CCDS 27112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55511985 55512152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55512582 55512761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513172 55513246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513388 55513462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513634 55513717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55513807 55513896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55514234 55514338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55514565 55514651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515219 55515278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515523 55515656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515728 55515782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55515863 55515914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55516252 55516385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55516527 55516763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55516950 55517087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGTCGGACCCAGAGATGGGATGGGTGCCTGAGCCCCCGGCCATGACCCTGGGAGCCTCTCGAGTGGAGC
TGCGGGTGTCCTGCCATGGCCTGCTGGACCGAGACACGCTCACAAAGCCGCATCCATGTGTGCTGCTCAA
ACTCTACTCGGATGAGCAGTGGGTGGAGGTGGAACGCACGGAGGTGCTTCGCTCCTGTTCAAGCCCAGTC
TTCTCCCGGGTGCTGGCCATTGAATACTTTTTTGAAGAGAAGCAGCCTTTGCAGTTCCACGTGTTCGATG
CCGAGGATGGAGCCACCAGCCCCAGCAGCGACACCTTCCTCGGGTCTACGGAGTGCACCTTGGGCCAGAT
TGTGTCACAAACCAAGGTCACTAAGCCATTACTGCTGAAGAATGGGAAGACGGCGGGCAAGTCTACTATC
ACGATTGTGGCTGAGGAGGTATCAGGTACCAACGACTATGTGCAACTTACCTTCAGAGCCCACAAGCTGG
ATAACAAGGATCTGTTCAGCAAGTCTGACCCCTTCATGGAGATTTATAAGACCAATGGAGACCAGAGTGA
CCAACTGGTCTGGAGGACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCCGCCTGTCC
TTGCATTCTTTGTGCAGCTGTGACATCCACAGGCCGCTCAAGTTCCTGGTATATGACTATGACTCCAGTG
GAAAGCACGACTTCATCGGCGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAACCCTGG
GCAGGAGATGCAGTGGGACTGTATCAACCCCAAGTACCGAGACAAGAAGAAGAATTACAAGAGCTCAGGG
ACAGTCGTGCTGGCCCAGTGCACCGTGGAAAAAGTCCACACCTTCCTGGATTATATCATGGGTGGCTGCC
AGATCAGCTTCACGGTGGCTATCGACTTCACTGCCTCCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCA
CTGCCTCAGCCCCCGACAGCCCAACCACTACCTGCAGGCCTTGCGCACAGTGGGCGGTATCTGCCAGGAC
TATGACAGTGATAAGCGGTTCCCAGCTTTTGGCTTCGGAGCTCGAATCCCCCCAAACTTTGAGGTCTCCC
ATGACTTTGCTATCAACTTTGACCCAGAAAATCCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCCTA
CCGCCGCTGCTTGCCTCAGATCCAGCTCTATGGTCCTACCAACGTGGCCCCTATCATCAACCGTGTGGCT
GAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTACTGCTGGTGCTCACTGACG
GTGTGGTGAGTGATATGGCAGAGACCCGAACAGCCATTGTGCGAGCCTCCCGCCTGCCCATGTCAATCAT
CATCGTGGGTGTGGGCAACGCTGACTTCTCTGACATGAGGCTACTGGACGGAGATGATGGTCCCCTGCGT
TGCCCAAAGGGGGTACCTGCAGCCCGTGACATTGTCCAGTTTGTGCCCTTCAGGGACTTCAAGGACGCTG
CCCCCTCTGCACTAGCTAAGTGTGTCCTGGCAGAGGTGCCACGGCAGGTGGTAGAGTACTATGCCAGCCA
AGGTATCAGTCCCGGGGCTCCCAGGCCCTCCACGCCAGCTATGACTCCCAGCCCTAGCCCATGA

Translation (557 aa):
MSDPEMGWVPEPPAMTLGASRVELRVSCHGLLDRDTLTKPHPCVLLKLYSDEQWVEVERTEVLRSCSSPV
FSRVLAIEYFFEEKQPLQFHVFDAEDGATSPSSDTFLGSTECTLGQIVSQTKVTKPLLLKNGKTAGKSTI
TIVAEEVSGTNDYVQLTFRAHKLDNKDLFSKSDPFMEIYKTNGDQSDQLVWRTEVVKNNLNPSWEPFRLS
LHSLCSCDIHRPLKFLVYDYDSSGKHDFIGEFTSTFQEMQEGTANPGQEMQWDCINPKYRDKKKNYKSSG
TVVLAQCTVEKVHTFLDYIMGGCQISFTVAIDFTASNGDPRSSQSLHCLSPRQPNHYLQALRTVGGICQD
YDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVA
EPAQREQSTGQATKYSVLLVLTDGVVSDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGPLR
CPKGVPAARDIVQFVPFRDFKDAAPSALAKCVLAEVPRQVVEYYASQGISPGAPRPSTPAMTPSPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH