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Report for CCDS24553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24553.1 Public Mus musculus 11 Gabra1 23 108 98 CCDS HistoryNCBI Gene:14394Re-query CCDS DB by CCDS ID:24553.1Re-query CCDS DB by GeneID:14394See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020707.11 ENSMUSP00000020707.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020707.11Link to Ensembl Protein Viewer:ENSMUSP00000020707.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020707Re-query CCDS DB by Protein ID:ENSMUSP00000020707
Original member Current member EBI ENSMUST00000205546.1 ENSMUSP00000146133.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205546.1Link to Ensembl Protein Viewer:ENSMUSP00000146133.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205546Re-query CCDS DB by Protein ID:ENSMUSP00000146133
Original member Current member NCBI NM_001359035.1 NP_001345964.1 Accepted alive Link to Nucleotide Sequence:NM_001359035.1Link to Protein Sequence:NP_001345964.1Re-query CCDS DB by Nucleotide ID:NM_001359035Re-query CCDS DB by Protein ID:NP_001345964Link to BLAST:NP_001345964.1
Original member Current member NCBI NM_010250.5 NP_034380.1 Accepted alive Link to Nucleotide Sequence:NM_010250.5Link to Protein Sequence:NP_034380.1Re-query CCDS DB by Nucleotide ID:NM_010250Re-query CCDS DB by Protein ID:NP_034380Link to BLAST:NP_034380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345964.1 455 P62812 455 100% 0 0
NP_034380.1 455 P62812 455 100% 0 0

Chromosomal Locations for CCDS 24553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 42133479 42133790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42135408 42135610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42140249 42140401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42147090 42147233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42153334 42153416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42154809 42155029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42162554 42162621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42175902 42176011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42179560 42179633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAAGAAAAGTCGGGGTCTCTCTGACTATCTTTGGGCCTGGACCCTCATTCTGAGCACACTGTCGGGAA
GAAGCTATGGACAGCCCTCCCAAGATGAACTTAAAGACAACACCACTGTCTTCACAAGAATTTTGGACCG
ACTGCTGGACGGTTATGACAATCGTCTGAGACCAGGTTTGGGAGAGCGTGTAACTGAAGTGAAGACCGAC
ATTTTCGTCACCAGTTTCGGACCAGTTTCAGACCACGATATGGAGTATACAATAGATGTGTTTTTCCGTC
AAAGTTGGAAGGATGAAAGATTAAAATTCAAAGGACCCATGACAGTGCTCCGGCTAAACAACCTTATGGC
CAGTAAAATCTGGACTCCAGATACATTTTTCCACAATGGAAAGAAGTCTGTGGCCCACAACATGACCATG
CCTAATAAGCTCCTGCGTATCACAGAGGATGGCACTCTGCTGTACACCATGAGGTTGACCGTGAGAGCTG
AATGCCCAATGCACTTGGAAGACTTCCCTATGGATGCCCATGCCTGCCCACTAAAATTCGGAAGCTATGC
TTATACAAGAGCAGAAGTTGTCTATGAGTGGACCAGAGAGCCAGCCCGTTCAGTGGTTGTAGCAGAAGAT
GGGTCACGTTTAAACCAGTATGACCTTCTTGGACAAACAGTTGACTCTGGAATTGTTCAGTCCAGTACTG
GAGAATATGTGGTTATGACGACTCACTTCCACTTGAAGAGAAAAATTGGCTACTTTGTTATTCAAACATA
TCTGCCGTGCATAATGACAGTTATTCTCTCCCAAGTCTCCTTCTGGCTCAACAGAGAGTCAGTACCAGCA
AGAACTGTCTTTGGAGTGACGACTGTTCTGACTATGACAACCTTGAGTATCAGTGCCAGAAATTCCCTCC
CGAAGGTGGCTTATGCAACAGCTATGGACTGGTTTATTGCAGTATGCTATGCCTTTGTTTTCTCAGCTCT
GATTGAGTTTGCCACAGTAAACTATTTCACCAAGAGAGGGTATGCGTGGGATGGCAAAAGCGTGGTTCCA
GAAAAGCCAAAGAAAGTAAAGGATCCTCTCATTAAGAAAAACAACACATATGCTCCTACAGCAACCAGCT
ATACCCCTAACTTAGCCAGGGGTGACCCCGGCTTGGCAACTATTGCTAAAAGTGCGACCATAGAACCGAA
AGAAGTCAAGCCTGAGACAAAACCACCAGAACCCAAGAAAACCTTTAACAGCGTCAGCAAAATCGACCGA
CTGTCAAGAATAGCCTTTCCGCTGCTATTTGGAATCTTTAACTTAGTCTATTGGGCCACGTATTTAAACA
GAGAGCCTCAGCTAAAAGCCCCCACACCCCATCAATAG

Translation (455 aa):
MKKSRGLSDYLWAWTLILSTLSGRSYGQPSQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKTD
IFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTM
PNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAED
GSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPA
RTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVP
EKPKKVKDPLIKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSVSKIDR
LSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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