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Report for CCDS37608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37608.1 Public Mus musculus 17 H2-T22 23 108 98 CCDS HistoryNCBI Gene:15039Re-query CCDS DB by CCDS ID:37608.1Re-query CCDS DB by GeneID:15039See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077960.6 ENSMUSP00000077111.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077960.6Link to Ensembl Protein Viewer:ENSMUSP00000077111.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077960Re-query CCDS DB by Protein ID:ENSMUSP00000077111
Original member Current member EBI ENSMUST00000080015.11 ENSMUSP00000078927.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080015.11Link to Ensembl Protein Viewer:ENSMUSP00000078927.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080015Re-query CCDS DB by Protein ID:ENSMUSP00000078927
Original member NCBI NM_001359755.1 NP_001346684.1 Updated not alive Link to Nucleotide Sequence:NM_001359755.1Link to Protein Sequence:NP_001346684.1Re-query CCDS DB by Nucleotide ID:NM_001359755Re-query CCDS DB by Protein ID:NP_001346684
Current member NCBI NM_001359755.2 NP_001346684.1 Accepted alive Link to Nucleotide Sequence:NM_001359755.2Link to Protein Sequence:NP_001346684.1Re-query CCDS DB by Nucleotide ID:NM_001359755Re-query CCDS DB by Protein ID:NP_001346684Link to BLAST:NP_001346684.1
Original member NCBI NM_010397.5 NP_034527.1 Updated not alive Link to Nucleotide Sequence:NM_010397.5Link to Protein Sequence:NP_034527.1Re-query CCDS DB by Nucleotide ID:NM_010397Re-query CCDS DB by Protein ID:NP_034527
Current member NCBI NM_010397.6 NP_034527.1 Accepted alive Link to Nucleotide Sequence:NM_010397.6Link to Protein Sequence:NP_034527.1Re-query CCDS DB by Nucleotide ID:NM_010397Re-query CCDS DB by Protein ID:NP_034527Link to BLAST:NP_034527.1

Chromosomal Locations for CCDS 37608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36038751 36038776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36038985 36039054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36039177 36039223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36039342 36039374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36040225 36040329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36040478 36040753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36041449 36041685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36041868 36042128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36042342 36042426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGTCCTGGGTCCTCAGGGCCGCTGTGGTCTGCGCCCTTCTCCTGCAGCTGGATGCCAGACCATCCTGGA
CTCGGATCCCTTTGGGTTCACACTCGCTTAGGTATTTCTACACCGCTGTGTCCCGGCCTGGCCTTGGGGA
GCCCTGGTTCATAATCGTCGGCTATGTGGACGACATGCAGGTCCTGCGCTTCAGCAGCAAGGAGGAGACT
CCGAGGATGGCACCCTGGCTGGAGCAGGAGGAAGCAGATAACTGGGAGCAGCAGACTCGTATAGTCACAA
TTCAAGGACAGCTGTCTGAAAGGAATCTGATGACCCTGGTTCATTTTTACAACAAGAGCATGGACGACTC
TCACACACTACAGTGGCTGCAAGGCTGCGATGTGGAGCCAGATCGGCACCTGTGTCTCTGGTACAACCAG
CTCGCCTATGATAGCGAGGATCTCCCCACCCTGAACGAAAACCCAAGTTCCTGTACAGTGGGAAACAGCA
CTGTACCTCACATCTCTCAGGACCTGAAGAGCCACTGCTCAGATCTGCTGCAGAAATACCTGGAAAAAGG
GAAGGAGAGGCTGCTGCGTTCAGACCCTCCAAAGGCACATGTGACCCGTCACCCCAGACCTGAAGGTGAT
GTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGG
AGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGC
AGCTGTGGTGGTGCCTCTTGGGAAAGAGCAGAGTTACACATGCCATGTGTACCATGAGGGGCTGCCTGAG
CCCCTCATCCTGAGATGGGAGCCTGCATGGTACCAAAAGCCTTGGATTTGGATTGTTGCCATGGTTTTCA
TTTTGTTCATCATTTGTCTCTGTGTGGTTTGCATATGCATGAAGAAGAATGCAGGTGGGAGAGGAAGGCG
TGACACCCAAGAAGCAGGCAGAGACAGTCCCCAAGACTCTAGCAAGACTGTTGTGGATGATGAGGAGATG
GGGGTTTGCTTTTGGAAGATTAAGTCCTGTAAAACTTGTCTAGGCCACTCCCCAGGAACTTCAGTTGGCG
AGTCTTTACTGTCACCTTGA

Translation (379 aa):
MSWVLRAAVVCALLLQLDARPSWTRIPLGSHSLRYFYTAVSRPGLGEPWFIIVGYVDDMQVLRFSSKEET
PRMAPWLEQEEADNWEQQTRIVTIQGQLSERNLMTLVHFYNKSMDDSHTLQWLQGCDVEPDRHLCLWYNQ
LAYDSEDLPTLNENPSSCTVGNSTVPHISQDLKSHCSDLLQKYLEKGKERLLRSDPPKAHVTRHPRPEGD
VTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPLGKEQSYTCHVYHEGLPE
PLILRWEPAWYQKPWIWIVAMVFILFIICLCVVCICMKKNAGGRGRRDTQEAGRDSPQDSSKTVVDDEEM
GVCFWKIKSCKTCLGHSPGTSVGESLLSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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