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Report for CCDS48654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48654.1 Public Mus musculus 10 Nfyb 23 108 98 CCDS HistoryNCBI Gene:18045Re-query CCDS DB by CCDS ID:48654.1Re-query CCDS DB by GeneID:18045See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130911.7 ENSMUSP00000122403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130911.7Link to Ensembl Protein Viewer:ENSMUSP00000122403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130911Re-query CCDS DB by Protein ID:ENSMUSP00000122403
Original member NCBI NM_010914.2 NP_035044.1 Updated not alive Link to Nucleotide Sequence:NM_010914.2Link to Protein Sequence:NP_035044.1Re-query CCDS DB by Nucleotide ID:NM_010914Re-query CCDS DB by Protein ID:NP_035044
Current member NCBI NM_010914.3 NP_035044.1 Accepted alive Link to Nucleotide Sequence:NM_010914.3Link to Protein Sequence:NP_035044.1Re-query CCDS DB by Nucleotide ID:NM_010914Re-query CCDS DB by Protein ID:NP_035044Link to BLAST:NP_035044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035044.1 207 P63139 207 100% 0 0

Chromosomal Locations for CCDS 48654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 82750415 82750447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82750738 82750817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82751384 82751465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82752407 82752604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82754965 82755095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82756702 82756795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82761833 82761838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGACAATGGACGGCGACAGCTCCACCACAGATGCCTCCCAGCTAGGGATTTCTGCAGACTACATCGGAG
GAAGTCATTATGTGATCCAGCCCCATGATGATACTGAGGACAGCATGAATGATCATGAAGATACAAATGG
TTCAAAAGAAAGTTTCAGAGAACAAGATATTTATCTTCCAATTGCAAATGTGGCTAGGATAATGAAAAAT
GCCATACCTCAAACAGGAAAGATCGCAAAAGATGCCAAAGAATGTGTTCAGGAATGTGTGAGTGAATTTA
TAAGCTTCATCACGTCGGAAGCAAGCGAAAGGTGTCATCAGGAGAAGCGGAAGACAATCAATGGGGAGGA
TATTCTGTTTGCCATGTCCACTCTAGGCTTTGACAGCTACGTGGAGCCTCTGAAACTGTACCTTCAGAAG
TTCAGAGAGGCCATGAAAGGAGAGAAGGGTATCGGGGGAGCAGTCTCCGCCACAGATGGACTAAGCGAAG
AGCTCACGGAAGAGGCATTCACTAACCAGTTACCAGCTGGCTTAATAACTGCAGATGGTCAACAGCAAAA
CGTTATGGTTTACACAACGTCTTACCAACAGATTTCTGGTGTCCAGCAAATTCAGTTTTCATGA

Translation (207 aa):
MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKN
AIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK
FREAMKGEKGIGGAVSATDGLSEELTEEAFTNQLPAGLITADGQQQNVMVYTTSYQQISGVQQIQFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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