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Report for CCDS39151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39151.1 Public Mus musculus 5 Ppef2 23 108 98 CCDS HistoryNCBI Gene:19023Re-query CCDS DB by CCDS ID:39151.1Re-query CCDS DB by GeneID:19023See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031359.8 ENSMUSP00000031359.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031359.8Link to Ensembl Protein Viewer:ENSMUSP00000031359.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031359Re-query CCDS DB by Protein ID:ENSMUSP00000031359
Original member Current member EBI ENSMUST00000201130.3 ENSMUSP00000144157.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201130.3Link to Ensembl Protein Viewer:ENSMUSP00000144157.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201130Re-query CCDS DB by Protein ID:ENSMUSP00000144157
Original member NCBI NM_011148.4 NP_035278.1 Updated not alive Link to Nucleotide Sequence:NM_011148.4Link to Protein Sequence:NP_035278.1Re-query CCDS DB by Nucleotide ID:NM_011148Re-query CCDS DB by Protein ID:NP_035278
Current member NCBI NM_011148.5 NP_035278.1 Accepted alive Link to Nucleotide Sequence:NM_011148.5Link to Protein Sequence:NP_035278.1Re-query CCDS DB by Nucleotide ID:NM_011148Re-query CCDS DB by Protein ID:NP_035278Link to BLAST:NP_035278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035278.1 757 O35385 757 100% 0 0

Chromosomal Locations for CCDS 39151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92226974 92227227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92228647 92228734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92230403 92230566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92231720 92231826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92234174 92234316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92235732 92235917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92238745 92239143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92244604 92244753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92244829 92244865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92245383 92245549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92246735 92246781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92247758 92247872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92249098 92249273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92250289 92250346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92250475 92250602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92253105 92253159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGGGAAGCAGCTCATCCACCCAGCACCACTTTGCGTTTCAGAACGCTGAGAAAGCCTTCAAGGCAGCGG
CCCTGATCCAGAGATGGTACCGGCGCTACATGGCCCGCCTAGAGATGAGGAGGCGATGTACCTGGAACAT
CTTCCAGTCTATAGAGTATGCTGGACAGCAAGACCAGGTCAAGCTCCATGAATTCTTCAGCTACCTTGTG
GACCATTTCACTCCCAGCAGCCACCATGAGAGAGATTTCCTGAACCGCATGTTCACCGAAGAGAGATTCG
CCCAGGACGTGGAGACAGAGGAGGGTGGAGATTTTGAATCCATAGAGGTGCCAGACAGCTACACGGGGCC
ACGCCTCTCCTTCCCCCTTCTTCCTGACCATGCCACTGCCCTGGTGGAAGCTTTCAGGCTGCGACAACAG
CTCCATGCTCGATACGTCTTGAATCTTCTGTACGAGACCAGAAAACACCTGGCCCAGCTGCCCAACATCA
ACCGAGTCTCCACCTGCTACAGCGAGGAGGTCACAGTGTGTGGAGATCTACATGGCCAGTTGGATGATTT
AATATTTATATTTTATAAGAACGGTCTACCATCACCAGAGAGAGCATACGTGTTCAATGGTGACTTTGTG
GATCGAGGCAAGGACTCTGTAGAGGTCCTGATGGTTCTCTTTGCCTTCATGTTGGTATACCCCAAGGAGT
TCCATCTTAACAGAGGAAACCATGAGGACCATCTAGTGAACCTACGATATGGCTTCACCAAGGAAGTGAT
GCATAAATACAAGATACATGGGAAGAAAATCCTAAGGACACTTCAGGATGTCTTCTGCTGGCTTCCGTTG
GCCACTCTGGTTGATGAGAAAGTCCTTGTTCTTCATGGTGGAGTCTCAGACAAGACAGACCTGGAACTTC
TGGCTAAACTAGACAGGCACAAGATTGTTTCTACCATGAGGTGCAAAACAAGAAAGGAAAGTGAGAATCG
AGAGGAGCAGAAGAGAAAAGATAACCAGACAAGCTCTGGACAGAAACCTACTCCGTGGTTTCTTCCTCAA
AGCCGCTCTCTGCCCTCTTCGCCTTTTCACCTGGGCTCTGGCTTTAAGGCCTACAAAGCCGGCAGGTCCT
GCAGCATCCCCTGTGGCTCCCCTAACAGCAAGGAGCTATCCCGGCGGGGGCAGGTGCGGCGCTCAGTGGA
CCTGGAACTGGAACAGTGCCGGCAGCAAGCCGGCTTCCTGGGGATCAGAGAGAAGGGGGAGTCCTTGCCT
TTGGCCCCAGATGCTGACTGTGTTGCTGATGGGGGAGGGGTGCTGGAACCCACCCCCGAGGAGTGGAAGC
AGGTTGTAGATATTCTGTGGAGTGATCCCGCGGCTCAGGAGGGCTGCAAGGCCAACGCTGTCCGAGGAGG
AGGCTGTTACTTTGGGCCTGACGTGACAGAACGGTTGATGGAAAAATACAAGCTGCAACTCCTGATCCGT
TCGCATGAGTGCAAACCCGAGGGCTATGAGTTCTGTCACAACCGCAAGGTGTTAACCATCTTTTCTGCCT
CCAACTACTATGAAGTTGGCAGCAACAGAGGAGCCTACGTCAAGCTGGGGCCAGCCCTGACTCCACATAT
CGTGCAGTATCAAGCTAACAAGGCGACCCACAGGCTAACCATGAGGCAAAGGATCAGCAGGGTGGAGGAG
TCGGCCCTCAGAGCCCTTCGACAGAAATTATTTGCTCATTCGTCGGACCTGCTTGTTGAGTTTAGGAAGC
GCGACCCGGATGAGAGCGGTGTCATCACCCTGAGTGATTGGGCGACTGCCGTGGAGTCTGTGCTGCACCT
GGGACTGCCCTGGCGGATGCTGCGGCCACAACTGGTGAATAGTTCAGCGGATAACGTGTTGGAATACAGG
TCCTGGTTGGACAGTTTGGCCAAAGAACAGCTGAGCCGAGAGAATATTCAGTCGAGTTTGCTGGAAAAGC
TCTATCGAAACCGATCCAACTTGGAGACCATTTTTAGGATCATAGACAGCGATCATTCAGGATTCATCTC
CCTGGATGAGTTCAGGCAGACTTGGAAGCTCTTCAGCTCACATATGAGCATCGACATCACAGATGACGGC
ATCTGTGACCTCGCCAGAAGCATCGACTTCAACAAGGATGGCCACATCGACATCAATGAGTTCCTGGAGG
CCTTCCGCCTCGTGGAGCAGTCCTGCTTAGAGGGCCACGCCTCTGCTTGCCTGCAGTCCACAGACACTGC
TGAGAGTGGCCATAGCAGTCCAGGCCCATGCTGA

Translation (757 aa):
MGSSSSTQHHFAFQNAEKAFKAAALIQRWYRRYMARLEMRRRCTWNIFQSIEYAGQQDQVKLHEFFSYLV
DHFTPSSHHERDFLNRMFTEERFAQDVETEEGGDFESIEVPDSYTGPRLSFPLLPDHATALVEAFRLRQQ
LHARYVLNLLYETRKHLAQLPNINRVSTCYSEEVTVCGDLHGQLDDLIFIFYKNGLPSPERAYVFNGDFV
DRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGFTKEVMHKYKIHGKKILRTLQDVFCWLPL
ATLVDEKVLVLHGGVSDKTDLELLAKLDRHKIVSTMRCKTRKESENREEQKRKDNQTSSGQKPTPWFLPQ
SRSLPSSPFHLGSGFKAYKAGRSCSIPCGSPNSKELSRRGQVRRSVDLELEQCRQQAGFLGIREKGESLP
LAPDADCVADGGGVLEPTPEEWKQVVDILWSDPAAQEGCKANAVRGGGCYFGPDVTERLMEKYKLQLLIR
SHECKPEGYEFCHNRKVLTIFSASNYYEVGSNRGAYVKLGPALTPHIVQYQANKATHRLTMRQRISRVEE
SALRALRQKLFAHSSDLLVEFRKRDPDESGVITLSDWATAVESVLHLGLPWRMLRPQLVNSSADNVLEYR
SWLDSLAKEQLSRENIQSSLLEKLYRNRSNLETIFRIIDSDHSGFISLDEFRQTWKLFSSHMSIDITDDG
ICDLARSIDFNKDGHIDINEFLEAFRLVEQSCLEGHASACLQSTDTAESGHSSPGPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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