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Report for CCDS27206.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27206.1 Public Mus musculus 14 Sox7 23 108 98 CCDS HistoryNCBI Gene:20680Re-query CCDS DB by CCDS ID:27206.1Re-query CCDS DB by GeneID:20680See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27206.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079652.6 ENSMUSP00000078597.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079652.6Link to Ensembl Protein Viewer:ENSMUSP00000078597.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079652Re-query CCDS DB by Protein ID:ENSMUSP00000078597
Original member Current member NCBI NM_011446.1 NP_035576.1 Accepted alive Link to Nucleotide Sequence:NM_011446.1Link to Protein Sequence:NP_035576.1Re-query CCDS DB by Nucleotide ID:NM_011446Re-query CCDS DB by Protein ID:NP_035576Link to BLAST:NP_035576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035576.1 380 P40646 380 100% 0 0

Chromosomal Locations for CCDS 27206.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 63943756 63943993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63947755 63948659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCCTCGCTGCTGGGCGCCTATCCGTGGACCGAGGGACTGGAGTGTCCCGCCCTGGAAGCCGAGCTGT
CGGATGGGCTGTCGCCGCCCGCCGTCCCCCGACCTTCAGGGGACAAGAGTTCGGAAAGCCGGATCCGGCG
GCCCATGAATGCCTTCATGGTGTGGGCCAAGGATGAGAGGAAACGTCTGGCAGTGCAGAACCCGGACCTG
CACAACGCGGAGCTCAGCAAGATGCTGGGAAAGTCATGGAAGGCGCTGACACTGTCCCAGAAGAGACCCT
ATGTGGATGAGGCAGAGCGGCTGCGCCTGCAGCACATGCAGGATTACCCCAACTACAAGTACCGGCCCCG
CAGGAAGAAACAAGGCAAGCGCCTCTGCAAGCGCGTGGACCCTGGCTTCCTCCTCAGCTCCCTCTCTCGT
GACCAGAACACGCTGCCTGAGAAAAACGGCATTGGCAGGGGGGAGAAGGAGGACAGGGGTGAGTACTCCC
CAGGGGCCACCTTGCCTGGACTGCACAGCTGCTACCGCGAAGGTGCAGCTGCTGCCCCTGGCAGTGTGGA
CACGTATCCCTACGGGCTGCCCACACCTCCGGAGATGTCGCCCCTGGATGCGCTGGAGCCAGAGCAGACC
TTCTTCTCGTCCTCATGTCAGGAGGAGCATGGTCACCCCCATCACCTCCCCCATCTACCAGGGCCCCCTT
ACTCACCGGAGTTCACACCTAGTCCCCTCCACTGCAGCCACCCTCTAGGTTCTTTAGCCCTTGGCCAATC
CCCAGGGGTTTCTATGATGTCCTCTGTTTCTGGATGTCCCCCATCTCCAGCCTATTACTCCCATGCCACC
TACCACCCTCTCCACCCCAACCTCCAGGCCCACCTGGGCCAGCTGTCCCCACCTCCGGAGCACCCTGGCT
TTGACACCTTGGATCAGCTAAGCCAGGTGGAACTTCTGGGAGACATGGATCGCAATGAATTTGATCAGTA
TTTGAACACTCCCGGCCACCCTGACTCTGCTGCAGGGGTTGGAACCCTCACTGGGCATGTCCCGCTCTCC
CAGGGGACTCCCACAGGCCCTACAGAGACCAGCCTCATCTCAGTCCTGGCTGATGCCACGGCCACGTATT
ACAACAGCTACAGTGTGTCATAG

Translation (380 aa):
MASLLGAYPWTEGLECPALEAELSDGLSPPAVPRPSGDKSSESRIRRPMNAFMVWAKDERKRLAVQNPDL
HNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQGKRLCKRVDPGFLLSSLSR
DQNTLPEKNGIGRGEKEDRGEYSPGATLPGLHSCYREGAAAAPGSVDTYPYGLPTPPEMSPLDALEPEQT
FFSSSCQEEHGHPHHLPHLPGPPYSPEFTPSPLHCSHPLGSLALGQSPGVSMMSSVSGCPPSPAYYSHAT
YHPLHPNLQAHLGQLSPPPEHPGFDTLDQLSQVELLGDMDRNEFDQYLNTPGHPDSAAGVGTLTGHVPLS
QGTPTGPTETSLISVLADATATYYNSYSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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