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Report for CCDS30456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30456.1 Public Mus musculus X Alg13 23 108 98 CCDS HistoryNCBI Gene:67574Re-query CCDS DB by CCDS ID:30456.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070801.10 ENSMUSP00000068403.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070801.10Link to Ensembl Protein Viewer:ENSMUSP00000068403.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070801Re-query CCDS DB by Protein ID:ENSMUSP00000068403
Original member Current member NCBI NM_026247.3 NP_080523.2 Accepted alive Link to Nucleotide Sequence:NM_026247.3Link to Protein Sequence:NP_080523.2Re-query CCDS DB by Nucleotide ID:NM_026247Re-query CCDS DB by Protein ID:NP_080523Link to BLAST:NP_080523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080523.2 165 Q9D8C3-2 165 100% 0 0

Chromosomal Locations for CCDS 30456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 144318041 144318121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144319899 144320061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144322012 144322150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144324016 144324130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGAAGAGAGCGTTTGTGACTGTCGGGACCACCAGTTTCGACGAGCTCGTCGCACGGGTGGTCGCTAACG
ACTGCGTTCAGATCCTCGAGAGTCTGGGTTACAACCATCTTGTCCTCCAAGTTGGTAGAGGCACTGTGGT
GCCCAAACCATTCCGTACTGAGTCATTCACTCTGGATGTTTACAGGTATAAGGATTCTTTGAAAGAAGAC
CTTCAGCAAGCTGATCTTGTCATTAGCCACGCAGGTGCAGGAAGCTGTTTGGAGAGTCTGGAGAAAGGCA
AACCACTTGTGGTAGTTGTAAATGAAAAGTTAATGAACAATCATCAATTTGAATTGGCAAAGCAGTTGCA
CAAAGAAGGCCATCTCTTTTATTGTACCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGATTTATCA
ACACTGAAATGTTATCCTCCTGGCCAGCCAGAAAAATTTTCTGCATTTTTGGATAAAGTTGTTGGATTAC
AAAAATAA

Translation (165 aa):
MKRAFVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGTVVPKPFRTESFTLDVYRYKDSLKED
LQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSTLPGLLQSMDLS
TLKCYPPGQPEKFSAFLDKVVGLQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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