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Report for CCDS29754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29754.1 Public Mus musculus 19 Lipf 23 108 98 CCDS HistoryNCBI Gene:67717Re-query CCDS DB by CCDS ID:29754.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025680.4 ENSMUSP00000025680.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025680.4Link to Ensembl Protein Viewer:ENSMUSP00000025680.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025680Re-query CCDS DB by Protein ID:ENSMUSP00000025680
Original member Current member NCBI NM_026334.3 NP_080610.1 Accepted alive Link to Nucleotide Sequence:NM_026334.3Link to Protein Sequence:NP_080610.1Re-query CCDS DB by Nucleotide ID:NM_026334Re-query CCDS DB by Protein ID:NP_080610Link to BLAST:NP_080610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080610.1 395 Q9CPP7 395 100% 0 0

Chromosomal Locations for CCDS 29754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 33964522 33964623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33964774 33964891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33965514 33965712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33966812 33966921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33968713 33968849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33970746 33970892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33973023 33973094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33973516 33973587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33976468 33976698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGTGGCTGCTATTAGTAACAAGTGTGCTATCTGCATTTGGAGGTGCACATGGCCTATTTGGAAAACTGG
GTCCCAAAAACCCTGAAGCAAACATGAATGTTAGTCAGATGATAACTTACTGGGGATATCCAAGTGAGGA
ATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCT
GAGAATATCGGCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTA
CAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAG
TCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAGC
TTTGATGAAATGGCTAAATATGACCTTCCAGCCACCATAGACTTCATTGTACAGAAAACTGGACAAGAGA
AGATACACTATGTTGGTCACTCTCAGGGCACCACTATCGGTTTTATTGCCTTTTCTACCAATCCTGCTCT
GGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTT
AAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAGGTGATATTTGGTAACAAAATGTTCATGCCCCACA
ACTACTTAGATCAATTTCTTGGTACGGAAGTGTGCTCACGGGAGCTGCTAGATCTTCTCTGCAGCAACGC
TTTATTCATCTTCTGTGGATTTGACAAGAAAAACTTAAATGTGAGTCGCTTTGATGTGTATCTAGGGCAT
AATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAGCTTGCTAAATCTGGGAAGCTTCAAG
CCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGAAAACGCCTCCCTACTATGATGT
GTCAGCCATGACCGTGCCAATTGCAGTGTGGAACGGTGGCCATGACATCCTGGCTGATCCCCAAGATGTC
GCAATGCTGCTTCCCAAACTCCCCAACCTTCTGTACCATAAGGAGATTCTTCCCTACAATCACCTGGACT
TCATCTGGGCGATGGATGCGCCTCAAGAGGTTTACAATGAGATAGTTACCATGATGGCAGAAGACTAA

Translation (395 aa):
MWLLLVTSVLSAFGGAHGLFGKLGPKNPEANMNVSQMITYWGYPSEEYEVVTEDGYILGVYRIPYGKKNS
ENIGKRPVAYLQHGLIASATNWITNLPNNSLAFILADAGYDVWLGNSRGNTWSRKNVYYSPDSVEFWAFS
FDEMAKYDLPATIDFIVQKTGQEKIHYVGHSQGTTIGFIAFSTNPALAKKIKRFYALAPVATVKYTESPF
KKISLIPKFLLKVIFGNKMFMPHNYLDQFLGTEVCSRELLDLLCSNALFIFCGFDKKNLNVSRFDVYLGH
NPAGTSTQDLFHWAQLAKSGKLQAYNWGSPLQNMLHYNQKTPPYYDVSAMTVPIAVWNGGHDILADPQDV
AMLLPKLPNLLYHKEILPYNHLDFIWAMDAPQEVYNEIVTMMAED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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