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Report for CCDS34158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34158.1 Public Homo sapiens 5 DHX29 24 110 108 CCDS HistoryNCBI Gene:54505Re-query CCDS DB by CCDS ID:34158.1Re-query CCDS DB by GeneID:54505See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251636.10 ENSP00000251636.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251636.10Link to Ensembl Protein Viewer:ENSP00000251636.5Re-query CCDS DB by Nucleotide ID:ENST00000251636Re-query CCDS DB by Protein ID:ENSP00000251636
Original member Current member NCBI NM_019030.4 NP_061903.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019030.4Link to Protein Sequence:NP_061903.2Re-query CCDS DB by Nucleotide ID:NM_019030Re-query CCDS DB by Protein ID:NP_061903Link to BLAST:NP_061903.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061903.2 1369 Q7Z478 1369 100% 0 0

Chromosomal Locations for CCDS 34158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55256488 55256540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55259848 55259944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55261368 55261499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55262630 55262932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55267138 55267231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55267686 55267822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55269413 55269637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55270412 55270487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55270578 55270706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55272087 55272175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55273293 55273377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55274614 55274731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55274866 55275010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55276266 55276406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55277106 55277282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55281372 55281515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55283203 55283811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55285293 55285416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55285696 55285861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55289270 55289428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55290218 55290344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55294017 55294145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55295379 55295524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55296220 55296349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55297285 55297398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55298591 55298664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55307387 55307573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4110 nt):
ATGGGCGGCAAGAACAAGAAACACAAGGCTCCAGCGGCCGCGGTGGTCCGGGCCGCCGTGTCTGCTTCCA
GAGCCAAATCTGCCGAGGCTGGAATTGCCGGGGAGGCCCAAAGCAAGAAGCCAGTGTCCAGGCCGGCCAC
CGCTGCCGCTGCCGCTGCCGGCTCCAGGGAGCCCCGTGTCAAGCAAGGTCCAAAAATTTATAGTTTTAAT
TCTACAAATGATTCTAGTGGTCCTGCAAATCTGGATAAATCTATTTTGAAAGTGGTAATTAATAACAAAC
TAGAGCAAAGAATTATTGGAGTGATCAATGAGCATAAAAAGCAAAATAATGACAAAGGAATGATTTCTGG
AAGACTTACTGCCAAAAAATTGCAGGATTTATACATGGCTTTACAAGCATTTTCATTTAAGACAAAGGAC
ATTGAAGATGCCATGACCAATACACTCTTATATGGAGGTGACCTTCATTCTGCCTTGGATTGGCTCTGTT
TAAACCTTTCAGATGATGCACTTCCTGAAGGATTCAGTCAGGAATTTGAAGAGCAGCAACCTAAAAGTAG
GCCTAAATTTCAGTCTCCTCAAATACAAGCCACTATTTCACCTCCATTGCAACCTAAAACAAAAACATAT
GAAGAGGACCCTAAGAGTAAGCCAAAAAAGGAAGAAAAAAATATGGAAGTAAATATGAAAGAGTGGATTT
TACGATATGCTGAACAACAAAATGAAGAAGAAAAGAATGAGAATTCTAAAAGTTTAGAAGAGGAGGAAAA
ATTTGACCCTAATGAAAGGTACTTACATCTTGCAGCAAAACTGCTGGATGCAAAAGAACAAGCAGCTACC
TTTAAACTAGAAAAAAACAAGCAAGGCCAAAAAGAGGCTCAGGAAAAAATAAGGAAATTTCAAAGAGAAA
TGGAAACTTTAGAAGACCATCCAGTATTTAACCCAGCCATGAAGATTTCACATCAACAAAATGAAAGGAA
AAAGCCTCCTGTAGCCACAGAAGGAGAAAGTGCATTGAATTTTAATTTATTTGAAAAATCTGCAGCTGCT
ACTGAAGAAGAGAAAGATAAAAAGAAAGAACCTCATGATGTAAGAAATTTTGACTATACTGCTCGAAGTT
GGACTGGAAAATCTCCCAAACAATTTCTGATTGATTGGGTCAGGAAGAATCTTCCCAAGAGTCCAAATCC
TTCCTTTGAAAAAGTTCCAGTAGGTAGATACTGGAAATGTAGGGTTAGGGTAATCAAGTCTGAAGATGAT
GTCCTGGTAGTATGCCCTACAATCTTAACAGAAGATGGCATGCAAGCTCAGCACCTGGGAGCTACTTTAG
CCCTTTACCGTTTAGTTAAAGGGCAGTCAGTTCATCAGTTACTTCCTCCCACTTACCGAGATGTTTGGCT
GGAGTGGAGTGATGCAGAAAAGAAAAGGGAAGAATTAAATAAAATGGAAACCAATAAACCACGTGATCTT
TTTATTGCCAAACTTCTGAATAAACTGAAACAGCAGCAACAGCAGCAACAACAGCATTCTGAAAATAAGA
GAGAAAACTCTGAAGATCCCGAGGAATCTTGGGAAAATTTAGTTTCGGATGAGGATTTTTCTGCACTGTC
CTTGGAATCAGCAAATGTGGAAGATTTGGAACCTGTTAGAAACCTCTTTAGAAAGTTGCAAAGCACACCT
AAGTATCAGAAACTTCTAAAGGAAAGACAACAGCTACCTGTATTTAAACATCGGGACTCAATTGTTGAAA
CTCTTAAAAGGCATCGGGTAGTGGTTGTGGCAGGTGAAACAGGGAGTGGTAAAAGTACTCAGGTACCACA
TTTTCTATTGGAAGATTTGCTTCTAAATGAGTGGGAAGCAAGTAAATGTAACATTGTCTGTACCCAACCC
CGAAGAATCTCAGCAGTTAGTTTAGCCAACAGAGTATGTGATGAATTGGGCTGTGAAAATGGACCTGGAG
GAAGGAATTCCTTGTGTGGATATCAGATCCGGATGGAATCTCGAGCTTGTGAATCTACCAGGTTACTCTA
TTGTACAACAGGGGTTTTGCTAAGGAAACTTCAAGAAGATGGTCTTCTAAGTAATGTGTCTCATGTTATT
GTAGATGAGGTTCATGAAAGAAGTGTCCAGTCAGACTTCCTACTAATTATCTTGAAGGAAATTTTACAGA
AACGTTCTGATCTACACTTGATTCTAATGAGTGCCACTGTGGACAGCGAAAAATTTTCTACATATTTCAC
ACACTGCCCCATTCTCAGAATTTCAGGAAGAAGTTATCCTGTTGAGGTTTTTCATCTTGAAGATATAATA
GAAGAAACAGGCTTTGTACTGGAAAAAGACTCAGAATATTGTCAGAAATTTCTGGAAGAGGAAGAAGAAG
TAACCATTAATGTTACAAGCAAAGCAGGGGGAATAAAAAAATATCAGGAATACATCCCAGTTCAGACTGG
AGCACATGCTGATTTAAATCCATTTTACCAAAAGTACAGCAGCCGCACTCAGCATGCTATTCTATACATG
AATCCTCATAAAATCAACCTGGATCTCATTTTGGAACTTCTTGCATACTTAGATAAAAGTCCCCAATTCA
GAAATATTGAAGGAGCAGTATTGATCTTTTTACCAGGACTTGCTCATATTCAGCAGTTGTATGATCTTCT
ATCAAATGATAGAAGATTTTATTCTGAACGATATAAAGTGATAGCTCTGCATTCTATTCTTTCAACCCAA
GATCAAGCTGCAGCATTCACACTTCCCCCTCCAGGAGTCAGGAAGATTGTTTTAGCAACCAATATTGCAG
AGACGGGTATCACTATTCCTGATGTTGTATTTGTAATTGATACTGGAAGAACAAAAGAAAATAAGTACCA
TGAAAGCAGTCAGATGAGTTCTTTGGTGGAGACGTTTGTCAGTAAAGCCAGTGCTTTGCAGCGCCAGGGA
AGAGCTGGGCGGGTCAGAGATGGCTTCTGTTTCCGAATGTACACAAGAGAAAGATTTGAAGGCTTTATGG
ATTATTCTGTTCCTGAAATCTTACGTGTACCTTTGGAGGAATTATGCCTTCATATTATGAAATGTAATCT
TGGTTCTCCTGAAGATTTCCTCTCCAAAGCCTTAGATCCTCCTCAGCTCCAAGTGATCAGCAATGCAATG
AATTTGCTCCGAAAAATTGGAGCTTGTGAATTAAATGAGCCTAAACTGACTCCGTTGGGCCAACACCTTG
CAGCTTTACCTGTGAATGTCAAGATTGGCAAGATGCTTATTTTTGGTGCCATATTTGGCTGCCTTGACCC
AGTGGCAACACTAGCTGCAGTTATGACAGAGAAGTCTCCTTTTACCACACCAATTGGTCGAAAAGATGAA
GCAGATCTTGCAAAATCAGCTTTGGCCATGGCGGATTCAGACCACCTGACGATCTACAATGCATATCTAG
GATGGAAGAAAGCACGACAAGAAGGAGGTTATCGTTCTGAAATCACATACTGCCGGAGGAACTTTCTTAA
TAGAACATCACTGTTAACCCTAGAGGATGTAAAGCAGGAGTTAATAAAGTTGGTTAAGGCAGCAGGATTT
TCATCTTCCACAACTTCTACCAGCTGGGAAGGAAACAGAGCCTCACAGACCCTCTCATTCCAAGAAATTG
CCCTTCTTAAAGCTGTACTGGTGGCTGGACTGTATGACAATGTGGGGAAGATAATCTATACAAAGTCAGT
GGATGTTACAGAAAAATTGGCTTGCATTGTGGAGACGGCCCAAGGCAAAGCACAAGTACACCCATCCTCA
GTAAATCGAGATTTGCAAACTCATGGATGGCTCTTATACCAGGAGAAGATAAGGTATGCCAGAGTGTATT
TGAGAGAAACTACCCTAATAACCCCTTTTCCAGTTTTACTTTTTGGTGGTGATATAGAAGTTCAGCACCG
AGAACGTCTTCTTTCTATTGATGGCTGGATCTATTTTCAGGCCCCTGTAAAGATAGCTGTCATTTTCAAG
CAGCTGAGAGTTCTCATTGATTCAGTTTTAAGAAAAAAGCTTGAAAATCCAAAGATGTCCCTTGAAAATG
ACAAGATTCTGCAGATCATTACGGAATTGATAAAAACAGAGAATAACTGA

Translation (1369 aa):
MGGKNKKHKAPAAAVVRAAVSASRAKSAEAGIAGEAQSKKPVSRPATAAAAAAGSREPRVKQGPKIYSFN
STNDSSGPANLDKSILKVVINNKLEQRIIGVINEHKKQNNDKGMISGRLTAKKLQDLYMALQAFSFKTKD
IEDAMTNTLLYGGDLHSALDWLCLNLSDDALPEGFSQEFEEQQPKSRPKFQSPQIQATISPPLQPKTKTY
EEDPKSKPKKEEKNMEVNMKEWILRYAEQQNEEEKNENSKSLEEEEKFDPNERYLHLAAKLLDAKEQAAT
FKLEKNKQGQKEAQEKIRKFQREMETLEDHPVFNPAMKISHQQNERKKPPVATEGESALNFNLFEKSAAA
TEEEKDKKKEPHDVRNFDYTARSWTGKSPKQFLIDWVRKNLPKSPNPSFEKVPVGRYWKCRVRVIKSEDD
VLVVCPTILTEDGMQAQHLGATLALYRLVKGQSVHQLLPPTYRDVWLEWSDAEKKREELNKMETNKPRDL
FIAKLLNKLKQQQQQQQQHSENKRENSEDPEESWENLVSDEDFSALSLESANVEDLEPVRNLFRKLQSTP
KYQKLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNEWEASKCNIVCTQP
RRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRACESTRLLYCTTGVLLRKLQEDGLLSNVSHVI
VDEVHERSVQSDFLLIILKEILQKRSDLHLILMSATVDSEKFSTYFTHCPILRISGRSYPVEVFHLEDII
EETGFVLEKDSEYCQKFLEEEEEVTINVTSKAGGIKKYQEYIPVQTGAHADLNPFYQKYSSRTQHAILYM
NPHKINLDLILELLAYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSNDRRFYSERYKVIALHSILSTQ
DQAAAFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQG
RAGRVRDGFCFRMYTRERFEGFMDYSVPEILRVPLEELCLHIMKCNLGSPEDFLSKALDPPQLQVISNAM
NLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDE
ADLAKSALAMADSDHLTIYNAYLGWKKARQEGGYRSEITYCRRNFLNRTSLLTLEDVKQELIKLVKAAGF
SSSTTSTSWEGNRASQTLSFQEIALLKAVLVAGLYDNVGKIIYTKSVDVTEKLACIVETAQGKAQVHPSS
VNRDLQTHGWLLYQEKIRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSIDGWIYFQAPVKIAVIFK
QLRVLIDSVLRKKLENPKMSLENDKILQIITELIKTENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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