NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15672.1 Public Mus musculus 2 Echdc3 23 108 98 CCDS HistoryNCBI Gene:67856Re-query CCDS DB by CCDS ID:15672.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042658.4 ENSMUSP00000037371.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042658.4Link to Ensembl Protein Viewer:ENSMUSP00000037371.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000042658Re-query CCDS DB by Protein ID:ENSMUSP00000037371
Original member Current member NCBI NM_024208.4 NP_077170.2 Accepted alive Link to Nucleotide Sequence:NM_024208.4Link to Protein Sequence:NP_077170.2Re-query CCDS DB by Nucleotide ID:NM_024208Re-query CCDS DB by Protein ID:NP_077170Link to BLAST:NP_077170.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077170.2 300 Q9D7J9 300 100% 0 0

Chromosomal Locations for CCDS 15672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 6189340 6189651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6195583 6195783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6206415 6206512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6208468 6208589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6212791 6212960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCTGTGGTCGCAGGCCTTCGGGCCTTTGGGGTGAAGTGGCCCAGCTGGCTCAGGCGCAACCCATGGG
CCCCTCTCTCCGCCGGCTTCTGCAGCCCAGGGTCAGCAGGACCTGCGGGGTCGGAGTCAGAGCCAAGGCT
CACCAGCACGCGACAGCAGGACGGAATCAGGAACATTGTCTTAAGCAATCCCAGGAGGAGGAATGCGCTG
TCACTGGCCATGCTGAAATCTCTCCGAAGTGACATTCTTCACGAAGCTGAAAGTGAAGACCTGAAAGTCA
TTATAATTTCAGCCGAGGGCCCTGTGTTTTCATCTGGACATGATTTGAAAGAGCTGACAGATGCACAAGG
CCGTGATTATCACGCTGAGGTATTTCAGACCTGTTCTGAGGTCATGATGCTGATCCGGAACCACCCGGTC
CCCATCCTTGCCATGGTCAATGGCTTGGCCACAGCTGCAGGCTGCCAGCTCGTGGCCAGCTGTGATATTG
CTGTGGCAAGTGACAAGTCTTCTTTTGCAACTCCTGGAGTGAATGTTGGACTTTTCTGCTCCACCCCCGC
GGTCGCCCTGGGGAGAGCAGTGCCCAGAAAGGTGGCCCTGGAGATGCTCTTTACTGGGGAGCCCATTTCT
GCCCAGGAGGCCTTGCGCCATGGCCTTATCAGCAAAGTGGTACCAGAGGAACAGCTGGAGGCAGAGACCA
TGAGAATAGCAAAGAAGATTTCCTCTTTGAGCCGCTCTGTGGTGGCGTTGGGCAAGGCCACCTTTTACAA
ACAGCTGCCACAAGACCTTAGAACCGCCTACTTCCTCGCCTCCCAGGCCATGGTAGACAACCTGGCCTTG
CAGGATGGGCAGGAAGGAATTGAAGCCTTCATCCAGAAGAGAAAGCCCATCTGGTCACACTGA

Translation (300 aa):
MAVVAGLRAFGVKWPSWLRRNPWAPLSAGFCSPGSAGPAGSESEPRLTSTRQQDGIRNIVLSNPRRRNAL
SLAMLKSLRSDILHEAESEDLKVIIISAEGPVFSSGHDLKELTDAQGRDYHAEVFQTCSEVMMLIRNHPV
PILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPAVALGRAVPRKVALEMLFTGEPIS
AQEALRHGLISKVVPEEQLEAETMRIAKKISSLSRSVVALGKATFYKQLPQDLRTAYFLASQAMVDNLAL
QDGQEGIEAFIQKRKPIWSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH