NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22457.1 Public Mus musculus 8 Gipc1 23 108 98 CCDS HistoryNCBI Gene:67903Re-query CCDS DB by CCDS ID:22457.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019577.9 ENSMUSP00000019577.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019577.9Link to Ensembl Protein Viewer:ENSMUSP00000019577.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019577Re-query CCDS DB by Protein ID:ENSMUSP00000019577
Original member Current member NCBI NM_018771.3 NP_061241.1 Accepted alive Link to Nucleotide Sequence:NM_018771.3Link to Protein Sequence:NP_061241.1Re-query CCDS DB by Nucleotide ID:NM_018771Re-query CCDS DB by Protein ID:NP_061241Link to BLAST:NP_061241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061241.1 333 Q9Z0G0 333 100% 0 0

Chromosomal Locations for CCDS 22457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83660993 83661280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83661955 83662140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83662235 83662415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83663049 83663161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83663920 83664001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83664118 83664269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGCCACTGGGACTGGGGCGAAGGAAGAAAGCACCGCCTCTGGTGGAAAATGAGGAGGCGGAGCCAAGCC
GGAGTGGGCTGGGTGTTGGGGAGCCTGGGCCCCTGGGTGGGAGCGCAGCAGGAGAATCCCAGATGGGCTT
GCCCCCACCTCCTGCTGCCCTCCGGCCTCGCCTCGTGTTCCATACCCAGCTGGCCCACGGCAGCCCCACA
GGCCGCATCGAGGGCTTCACTAATGTCAAGGAGCTGTACGGCAAGATCGCTGAGGCCTTCCGACTACCAG
CTGCTGAGGTGATGTTCTGCACCCTCAACACCCACAAAGTGGACATGGACAAACTCCTGGGGGGCCAGAT
CGGCCTGGAAGACTTCATCTTTGCCCATGTGAAGGGGCAGCGCAAAGAGGTGGAAGTGTTCAAGTCGGAG
GAGGCTCTGGGGCTCACCATCACCGACAACGGGGCCGGCTACGCCTTCATTAAGCGCATCAAGGAAGGCA
GTGTGATTGACCACATTCAGCTCATCAGCGTGGGGGACATGATTGAAGCCATCAACGGGCAGAGCCTGCT
GGGCTGTCGGCATTACGAGGTTGCCAGGCTCCTCAAGGAGCTGCCCCGAGGCCGCACCTTCACCCTCAAA
CTCACAGAACCTCGAAAGGCCTTTGATATGATCAGCCAGCGTTCAGCCGGTGGCCACCCTGGTTCAGGCC
CACAACTGGGCACTGGCCGAGGGACCCTCCGTCTCCGATCCCGGGGCCCTGCCACCGTGGAGGATCTGCC
GTCGGCCTTTGAGGAGAAGGCCATTGAGAAGGTGGATGACTTGCTAGAGAGCTACATGGGGATCAGAGAC
ACGGAGCTGGCTGCCACCATGGTGGAGCTGGGAAAGGACAAAAGGAACCCGGACGAGCTGGCAGAAGCCC
TGGATGAGCGGCTCGGTGACTTCGCATTCCCAGATGAATTTGTCTTTGATGTCTGGGGAGCTATCGGGGA
TGCCAAGGTTGGCCGCTACTAA

Translation (333 aa):
MPLGLGRRKKAPPLVENEEAEPSRSGLGVGEPGPLGGSAAGESQMGLPPPPAALRPRLVFHTQLAHGSPT
GRIEGFTNVKELYGKIAEAFRLPAAEVMFCTLNTHKVDMDKLLGGQIGLEDFIFAHVKGQRKEVEVFKSE
EALGLTITDNGAGYAFIKRIKEGSVIDHIQLISVGDMIEAINGQSLLGCRHYEVARLLKELPRGRTFTLK
LTEPRKAFDMISQRSAGGHPGSGPQLGTGRGTLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYMGIRD
TELAATMVELGKDKRNPDELAEALDERLGDFAFPDEFVFDVWGAIGDAKVGRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH