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Report for CCDS25931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25931.1 Public Mus musculus 12 Sec23a 23 108 98 CCDS HistoryNCBI Gene:20334Re-query CCDS DB by CCDS ID:25931.1Re-query CCDS DB by GeneID:20334See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021375.11 ENSMUSP00000021375.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021375.11Link to Ensembl Protein Viewer:ENSMUSP00000021375.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021375Re-query CCDS DB by Protein ID:ENSMUSP00000021375
Original member Current member NCBI NM_001361956.1 NP_001348885.1 Accepted alive Link to Nucleotide Sequence:NM_001361956.1Link to Protein Sequence:NP_001348885.1Re-query CCDS DB by Nucleotide ID:NM_001361956Re-query CCDS DB by Protein ID:NP_001348885Link to BLAST:NP_001348885.1
Original member Current member NCBI NM_009147.2 NP_033173.2 Accepted alive Link to Nucleotide Sequence:NM_009147.2Link to Protein Sequence:NP_033173.2Re-query CCDS DB by Nucleotide ID:NM_009147Re-query CCDS DB by Protein ID:NP_033173Link to BLAST:NP_033173.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348885.1 765 Q01405 765 100% 0 0
NP_033173.2 765 Q01405 765 100% 0 0

Chromosomal Locations for CCDS 25931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 58959997 58960086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58966980 58967045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58968813 58968968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58971240 58971326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58972881 58973042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58974582 58974659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58978462 58978615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58982568 58982674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58985132 58985221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58986091 58986171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58989350 58989473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58990973 58991088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58992125 58992283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58997136 58997280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 58998259 58998338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59001819 59002055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59004490 59004576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59005259 59005316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 59006990 59007210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2298 nt):
ATGACAACCTATTTGGAATTTATCCAACAAAATGAAGAACGAGATGGGGTCCGGTTCAGTTGGAATGTTT
GGCCATCGAGTCGTCTGGAAGCTACAAGAATGGTTGTCCCAGTGGCAGCCCTGTTTACACCTCTGAAGGA
GAGACCCGACCTACCACCCATCCAGTACGAGCCTGTCCTGTGCAGTAGGACCACTTGCCGTGCAGTTTTG
AATCCTTTATGCCAAGTGGATTATCGAGCAAAACTCTGGGCTTGCAACTTTTGTTACCAAAGGAATCAGT
TTCCACCTACATATGCTGGGATATCTGAATTGAACCAGCCTGCAGAGCTTTTACCTCAGTTTTCAAGCAT
TGAATATGTAGTTCTGCGTGGTCCCCAGATGCCTTTGATATTTCTCTATGTGGTTGATACTTGCATAGAA
GATGAGGATTTGCAGGCTCTGAAGGAGTCCATGCAGATGTCGTTGAGCCTTTTGCCACCTACAGCTTTGG
TTGGACTTATTACCTTTGGGAGAATGGTGCAGGTTCATGAGCTTGGATGCGAAGGCATCTCAAAGAGCTA
TGTCTTCAGAGGAACAAAGGATCTGTCTGCCAAACAACTGCAGGAAATGCTGGGACTCTCTAAAGTACCT
GTTACTCAAGCCACACGCGGTCCTCAGGTACAGCAACCGCCTCCTTCCAATAGATTCTTACAGCCAGTAC
AGAAAATAGACATGAATCTCACAGATCTTCTGGGAGAACTTCAGCGAGACCCTTGGCCTGTACCACAAGG
AAAGAGACCGCTGCGTTCCTCAGGAGTGGCGCTTTCCATAGCTGTGGGACTGCTTGAGTGTACTTTCCCC
AACACTGGTGCTCGGATCATGATGTTCATCGGTGGTCCTGCTACCCAGGGGCCTGGCATGGTGGTGGGAG
ATGAGCTAAAGACACCTATAAGATCCTGGCACGACATTGAGAAGGACAATGCCAAATATGTTAAAAAGGG
AACTAAGCATTTTGAAGCGTTGGCTAATCGAGCTGCTACAACGGGGCATGTCATTGATATCTACGCCTGT
GCGTTGGACCAGACAGGCCTGCTGGAGATGAAGTGCTGTCCTAACCTTACTGGAGGATACATGGTAATGG
GTGACTCTTTCAATACTTCCTTATTCAAGCAAACTTTTCAAAGAGTCTTCACCAAAGATATACATGGCCA
GTTTAAAATGGGCTTTGGTGGCACATTAGAAATAAAGACTTCAAGGGAAATAAAGATTTCAGGAGCTATT
GGACCCTGTGTGTCTCTTAATTCAAAAGGACCTTGCGTGTCTGAAAATGAGATTGGAACAGGAGGCACTT
GTCAGTGGAAAATCTGTGGCCTCAGCCCCACCACAACCTTAGCCATATATTTTGAAGTTGTTAATCAGCA
TAATGCTCCAATTCCTCAAGGAGGACGAGGTGCAGTCCAATTTGTGACCCAGTATCAGCACTCAAGTGGC
CAGAGACGCATCCGAGTGACCACAATTGCTAGGAACTGGGCAGATGCTCAAACTCAAATCCAAAATATTG
CTGCATCTTTTGACCAGGAAGCAGCTGCCATTCTCATGGCCAGGCTGGCAATATACAGAGCAGAAACAGA
GGAAGGGCCAGACGTGCTAAGATGGTTGGACAGACAACTCATTCGACTGTGTCAAAAATTTGGAGAGTAT
CACAAAGATGATCCAAATTCCTTCCGGTTTTCAGAAACATTTTCTCTTTATCCTCAGTTTATGTTTCATT
TAAGAAGATCTCCTTTCTTGCAAGTTTTTAACAATAGTCCTGATGAGAGTTCATACTATCGTCACCATTT
CATGCGTCAGGATCTGACCCAGTCTCTGATCATGATTCAGCCCATTCTGTACGCCTACTCCTTCAGTGGC
CCGCCAGAGCCAGTTCTTCTAGACAGCAGCAGCATTCTTGCAGATCGGATTCTCCTCATGGACACGTTCT
TCCAGATTTTGATTTATCACGGTGAGACTATAGCACAGTGGCGGAAGTCAGGATACCAGGACATGCCAGA
ATATGAGAATTTCCGGCACCTTCTGCAAGCCCCAGTAGATGATGCACAAGAGATTCTTCACTCCAGATTT
CCAATGCCGAGATACATTGACACGGAGCATGGTGGCAGCCAGGCTCGTTTCCTCCTTTCGAAAGTCAACC
CTTCACAGACTCATAATAACATGTATGCCTGGGGGCAGGAGTCCGGAGCACCAATTCTCACGGATGATGT
TAGCTTACAAGTGTTCATGGATCATTTGAAGAAACTTGCAGTGTCGAGTGCTGCTTGA

Translation (765 aa):
MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVL
NPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCIE
DEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVP
VTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP
NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYAC
ALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGGTLEIKTSREIKISGAI
GPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAVQFVTQYQHSSG
QRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEY
HKDDPNSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSG
PPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF
PMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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