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Report for CCDS24082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24082.1 Public Mus musculus 10 Rfx4 23 108 98 CCDS HistoryNCBI Gene:71137Re-query CCDS DB by CCDS ID:24082.1Re-query CCDS DB by GeneID:71137See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060397.12 ENSMUSP00000051107.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060397.12Link to Ensembl Protein Viewer:ENSMUSP00000051107.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060397Re-query CCDS DB by Protein ID:ENSMUSP00000051107
Original member Current member NCBI NM_001024918.1 NP_001020089.1 Accepted alive Link to Nucleotide Sequence:NM_001024918.1Link to Protein Sequence:NP_001020089.1Re-query CCDS DB by Nucleotide ID:NM_001024918Re-query CCDS DB by Protein ID:NP_001020089Link to BLAST:NP_001020089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020089.1 735 Q7TNK1-1 735 100% 0 0

Chromosomal Locations for CCDS 24082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84756471 84756513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84780015 84780101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84798528 84798588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84814636 84814759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84835293 84835354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84840017 84840230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84840839 84840916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84844201 84844364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84858497 84858597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84860498 84860556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84863243 84863387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84868352 84868446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84868845 84868962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84880170 84880289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84880813 84880974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84894200 84894362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84895957 84896095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84904955 84905227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2208 nt):
ATGCATTGTGGGTTACTGGAGGAACCCGACATGGATTCCACAGAGAGCTGGATTGAAAGATGTCTCAATG
AAAGCGAGAATAAACGCTATTCCAGTCACACATCTCTGGGGAATGTGTCTAATGATGAAAATGAGGAAAA
AGAAAATAACAGAGCATCCAAGCCCCACTCCACGCCGGCCACCCTGCAATGGCTGGAGGAAAACTATGAG
ATTGCTGAGGGCGTCTGCATCCCCCGCAGCGCCCTCTACATGCACTACCTGGATTTCTGTGAGAAGAACG
ACACTCAGCCTGTCAATGCTGCCAGCTTTGGGAAGATCATAAGGCAGCAGTTTCCTCAGCTAACCACCAG
AAGACTCGGGACCCGAGGACAGTCAAAGTACCATTACTATGGCATAGCGGTGAAGGAGAGCTCCCAGTAT
TATGATGTGATGTACTCAAAGAAAGGAGCTGCCTGGGTGAGCGAGACGGGCAAGAGAGAAGTCACCAAGC
AGACGGTGGCATATTCTCCCCGGTCCAAGCTTGGGACATTGCTGCCAGACTTTCCAAACGTCAAAGACCT
AAATCTGCCAGCCAGTCTTCCTGAGGAGAAGGTGTCTACCTTTATTATGATGTACAGAACACACTGTCAG
AGAATACTGGACACTGTAATAAGAGCCAACTTTGATGAGGTTCAAAGTTTCCTTCTGCACTTTTGGCAAG
GGATGCCGCCCCACATGCTGCCCGTGCTAGGCTCCTCCACGGTGGTGAACATCGTGGGTGTGTGTGACTC
CATCCTCTACAAAGCCATCTCCGGTGTGTTGATGCCCACGGTGCTGCAGGCGTTGCCGGACAGCTTAACT
CAGGTGATCCGAAAGTTTGCCAAGCAGCTGGACGAGTGGCTGAAAGTGGCTCTCCACGATCTCCCGGAAA
ACCTGAGAAACATCAAATTTGAATTATCAAGGAGGTTTTCCCAAATCCTAAGGAGGCAAACATCGCTGAA
CCATCTGTGCCAGGCATCTCGAACGGTGATCCACAGTGCAGACATCACGTTCCAGATGCTGGAGGACTGG
AGGAATGTGGACCTGAGTAGCATCACCAAGCAGACTCTGTATACCATGGAGGACTCTCGGGATGAGCACC
GCAGACTCATCATCCAGTTGTACCAGGAGTTTGACCACCTGCTGGAGGAACAGTCCCCCATCGAGTCTTA
CATAGAATGGCTGGATACCATGGTAGACCGATGCGTTGTAAAGGTGGCTGCCAAGAGACAAGGGTCTCTG
AAGAAAGTAGCCCAACAGTTCCTGCTGATGTGGTCTTGCTTTGGTACGAGGGTGATCCGGGACATGACCT
TGCACAGTGCCCCCAGCTTCGGGTCTTTTCACCTGATTCACCTGATGTTCGACGACTACGTGCTCTACTT
GCTAGAATCTCTGCATTGTCAGGAGCGGGCCAACGAGCTCATGCGAGCCATGAAAGGAGAAGGAAGCACT
GCAGAAGCCCAGGAAGAGATTATCTTGACAGAGGCTACCCCACCAACCCCTTCACCTGGTCCATCATTTT
CTCCAGCAAAGTCTGCCACATCTGTGGAGGTGCCACCTCCCTCCTCCCCTGTCAGCAACCCATCCCCCGA
ATACACTGGCCTTAGCACAGCAGGAGCGATGCAGTCATATACGTGGTCGCTAACATATACAGTAACAACG
GCTGCAGGGTCACCGGCTGAGAACTCCCAACAACTACCCTGTATGAGGAGCACCCATATGCCTTCTTCCT
CCGTCACACACAGGATACCAGTCTACTCCCACAGAGAGGAGCATGGGTACACGGGAAGCTATAACTACGG
GAGCTATGGCAACCAGCATCCTCACCCACTGCAGAACCAGTATCCAGCCTTGCCTCATGACACAGCCATC
TCTGGGCCTCTCCACTATTCCCCTTACCACAGGAGCTCTGCCCAGTACCCTTTCAATAGCCCCACTTCCA
GGATGGAACCTTGTTTGATGAGCAGTACTCCCAGGCTGCATCCTACCCCAGTGACTCCCCGATGGCCAGA
GGTGCCGACTGCCAACGCATGCTACACAAGCCCATCTGTGCATTCCACGAGGTATGGAAACTCTAGTGAC
ATGTACACCCCGCTGACCACGCGCAGGAATTCTGAGTATGAGCACATGCAACACTTTCCTGGCTTTGCTT
ACATCAACGGAGAGGCCTCCACTGGATGGGCTAAGTGA

Translation (735 aa):
MHCGLLEEPDMDSTESWIERCLNESENKRYSSHTSLGNVSNDENEEKENNRASKPHSTPATLQWLEENYE
IAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKESSQY
YDVMYSKKGAAWVSETGKREVTKQTVAYSPRSKLGTLLPDFPNVKDLNLPASLPEEKVSTFIMMYRTHCQ
RILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLT
QVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDW
RNVDLSSITKQTLYTMEDSRDEHRRLIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSL
KKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGST
AEAQEEIILTEATPPTPSPGPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTAGAMQSYTWSLTYTVTT
AAGSPAENSQQLPCMRSTHMPSSSVTHRIPVYSHREEHGYTGSYNYGSYGNQHPHPLQNQYPALPHDTAI
SGPLHYSPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTPVTPRWPEVPTANACYTSPSVHSTRYGNSSD
MYTPLTTRRNSEYEHMQHFPGFAYINGEASTGWAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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