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Report for CCDS19132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19132.1 Public Mus musculus 5 Galntl5 23 108 98 CCDS HistoryNCBI Gene:67909Re-query CCDS DB by CCDS ID:19132.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030778.8 ENSMUSP00000030778.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030778.8Link to Ensembl Protein Viewer:ENSMUSP00000030778.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030778Re-query CCDS DB by Protein ID:ENSMUSP00000030778
Original member Current member NCBI NM_026449.3 NP_080725.2 Accepted alive Link to Nucleotide Sequence:NM_026449.3Link to Protein Sequence:NP_080725.2Re-query CCDS DB by Nucleotide ID:NM_026449Re-query CCDS DB by Protein ID:NP_080725Link to BLAST:NP_080725.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080725.2 431 Q9D4M9 431 100% 0 0

Chromosomal Locations for CCDS 19132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 25186105 25186297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25189830 25189947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25195286 25195452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25198412 25198534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25203133 25203382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25210324 25210441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25217502 25217651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 25220006 25220182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGAAAAGTGTCATAATTCAGGGTTTATTCTGTGGATTCCTGGCCATCGGGCTCTGGGCATCTATGTTAC
TTTTGTTTTTGCACCTTGAACAAGAAGACATGCTGGAGAATGAAAAGGAGGAACTCCTAAAGAAGAGGTC
ACTCGGAAAAAATGCGCACCAGCAAACCCGTCACTCAGAGGACGTCACTCATGATGAGGTTAACTTTTCA
GATCCAGAACTTATCCAAGGATTGAGGCGATATGGATTAAATGCCATCATGAGTAGAAGACTGGGCATCG
AGAGAGAGGTGCCAGATTCCAGGGATAAAATATGTCAGCAGAAACACTACCCATTCAATCTACCCACTGC
CAGCATCATCATATGCTTCTATAATGAAGAATTTAACACCTTGCTCCGGGCAGTGTCGAGTGTGGTGAAC
CTCAGTCCGCAGCATCTCCTGGAGGAGATCATTCTGGTGGATGACATGAGTGAATTTGATGATTTGAAGG
ACAAACTGGACTATTATCTGGAAATTTTTCGTGGAAAAGTTAAATTAATAAGAAACAAAAAGAGAGAGGG
TCTTATCAGATCAAAGATGATTGGCGCCTCCCGGGCTTCAGGGGACATCCTGGTGTTCTTGGATAGTCAC
TGTGAGGTGAATAGAGTCTGGCTAGAACCCTTGCTGCATGCCATTGCTAAGGATCACAAAATGGTGGTAT
GCCCTATTATCGATGTCATCAATGAATTAACCTTGGATTATATGGCGGCACCTATTGTAAGGGGAGCTTT
TGACTGGAATCTGAATCTCAGATGGGACAATGTTTTCGCATATGAGTTGGACGGCCCAGAAGGACCAAGT
ACACCTATCCGGTCACCTGCAATGACAGGAGGAATTTTTGCTATAAACAGACATTATTTTAATGAACTTG
GACAATATGACAACGGCATGGATATTTGTGGAGGAGAAAATGTGGAACTTTCGCTAAGAATCTGGATGTG
TGGAGGCCAGCTCTTCATACTCCCTTGCTCTCGGGTTGGATATAACAGTAAGGCGCTGAGTCAACACAGG
CGTGCAAACCAGAGTGCCTTGTCAAGGAATTTACTGCGAGTGGTTCACGTCTGGCTAGATGAATACAAGG
GAAACTTTTTTCTTCAAAGACCTTCTTTGACATACGTTTCCTGTGGAAATATTAGTGAGCGCGTGGAATT
AAGGAAACGCCTGGGTTGCAAGTCATTCCAGTGGTATTTGGATAATATCTTTCCAGAGTTGGAGCCATTT
AACACAGAGAGGAAAAGGAAAAAAAATCGTTTCTAG

Translation (431 aa):
MKSVIIQGLFCGFLAIGLWASMLLLFLHLEQEDMLENEKEELLKKRSLGKNAHQQTRHSEDVTHDEVNFS
DPELIQGLRRYGLNAIMSRRLGIEREVPDSRDKICQQKHYPFNLPTASIIICFYNEEFNTLLRAVSSVVN
LSPQHLLEEIILVDDMSEFDDLKDKLDYYLEIFRGKVKLIRNKKREGLIRSKMIGASRASGDILVFLDSH
CEVNRVWLEPLLHAIAKDHKMVVCPIIDVINELTLDYMAAPIVRGAFDWNLNLRWDNVFAYELDGPEGPS
TPIRSPAMTGGIFAINRHYFNELGQYDNGMDICGGENVELSLRIWMCGGQLFILPCSRVGYNSKALSQHR
RANQSALSRNLLRVVHVWLDEYKGNFFLQRPSLTYVSCGNISERVELRKRLGCKSFQWYLDNIFPELEPF
NTERKRKKNRF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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