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Report for CCDS15222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15222.1 Public Mus musculus 1 Nifk 23 108 98 CCDS HistoryNCBI Gene:67949Re-query CCDS DB by CCDS ID:15222.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027626.12 ENSMUSP00000027626.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027626.12Link to Ensembl Protein Viewer:ENSMUSP00000027626.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027626Re-query CCDS DB by Protein ID:ENSMUSP00000027626
Original member Current member NCBI NM_026472.4 NP_080748.3 Accepted alive Link to Nucleotide Sequence:NM_026472.4Link to Protein Sequence:NP_080748.3Re-query CCDS DB by Nucleotide ID:NM_026472Re-query CCDS DB by Protein ID:NP_080748Link to BLAST:NP_080748.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080748.3 317 Q91VE6-1 317 100% 0 0

Chromosomal Locations for CCDS 15222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 118321893 118321997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118323582 118323725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118327625 118327733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118329353 118329564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118330606 118330662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118332344 118332478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118332750 118332941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGCTGGGTTAGCAGGCCCCGCGAAGCCGAGTCTGGCATTGAACCCGCAGGAAGACTCGCAGTTTGAGA
AGGCTCTGACGCAGATCCAAGGGCGCACGAAGAAGCCTCAGCAAAAGAAGAAAGAAAAACTTAACCGTGG
AGTAGTTTATCTGGGCCACCTACCTTCAACACTTTCTGAAAGCCACATCTATAACTACTGTGCCCAGTTT
GGCGACATTAGCAGATTCAGATTGTCTAGAAGTAAGCGGACTGGAAACAGCAAAGGCTATGCCTTTGTGG
AGTTTGAGTCTGAGGATGTTGCCAAGATAGTTGCAGAAACAATGGATAACTACCTTTTTGGTGAAAGACT
TCTATCATGTAAATTTATGCCACGAAAAAAAGTCCATAAAGACCTTTTCAGCCAGAGGAATGCTCTGTTT
CACCGGCCATCATTCCCAGCAGTGAAGCGCTATAATCGGAAACGAGGACATTTGCAGATGTTGAAGATGG
AGTATAGGTTTAAGAAGAAGGAAAAATTACTCCGGAAGAAACTAGCTGCAAAGGGGATTGATTATAGTTT
TCCCTCACTGGTCCTACCTAAGCCAAAGAACATTGCTGTCGCTCATAGAGATTCTGAGGGTAACCAGGTT
TTACCTGACCAAAAAGAAGGGCTTTCGGGTGAACCTAGGAGAAAGGAGAAGATGATGAAAGAGGACATTT
CCAATAACATTCCTAAGAAGCGTAAGAGGTCTAGGAGGAAGAAGTCGTCTGTGGACAGCCAGGGTCCCAC
ACCAGTTTGTACACCGACGTTTTTGGAGAGGCGAAAATCGCAGGTGATGGAAGTCGGTGGCGATAAAGAT
GATGAAATCATTCTCAAGCTGCCTGTGCCCCCAGTGAAAGAAGACACACAAAAGACCCCAACATCTGCAA
GCCCTGGGGGAAAAAGACCGAGAAAAAGGAAGAGCAAGCAGTGA

Translation (317 aa):
MAGLAGPAKPSLALNPQEDSQFEKALTQIQGRTKKPQQKKKEKLNRGVVYLGHLPSTLSESHIYNYCAQF
GDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALF
HRPSFPAVKRYNRKRGHLQMLKMEYRFKKKEKLLRKKLAAKGIDYSFPSLVLPKPKNIAVAHRDSEGNQV
LPDQKEGLSGEPRRKEKMMKEDISNNIPKKRKRSRRKKSSVDSQGPTPVCTPTFLERRKSQVMEVGGDKD
DEIILKLPVPPVKEDTQKTPTSASPGGKRPRKRKSKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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