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Report for CCDS48529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48529.1 Public Mus musculus 10 Rnf146 23 108 98 CCDS HistoryNCBI Gene:68031Re-query CCDS DB by CCDS ID:48529.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48529.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037548.10 ENSMUSP00000037224.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037548.10Link to Ensembl Protein Viewer:ENSMUSP00000037224.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037548Re-query CCDS DB by Protein ID:ENSMUSP00000037224
Original member Current member EBI ENSMUST00000160372.8 ENSMUSP00000124215.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160372.8Link to Ensembl Protein Viewer:ENSMUSP00000124215.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160372Re-query CCDS DB by Protein ID:ENSMUSP00000124215
Original member Current member EBI ENSMUST00000160144.8 ENSMUSP00000124288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160144.8Link to Ensembl Protein Viewer:ENSMUSP00000124288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160144Re-query CCDS DB by Protein ID:ENSMUSP00000124288
Original member Current member EBI ENSMUST00000162335.7 ENSMUSP00000124772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162335.7Link to Ensembl Protein Viewer:ENSMUSP00000124772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162335Re-query CCDS DB by Protein ID:ENSMUSP00000124772
Original member Current member NCBI NM_001110196.1 NP_001103666.1 Accepted alive Link to Nucleotide Sequence:NM_001110196.1Link to Protein Sequence:NP_001103666.1Re-query CCDS DB by Nucleotide ID:NM_001110196Re-query CCDS DB by Protein ID:NP_001103666Link to BLAST:NP_001103666.1
Original member Current member NCBI NM_001110197.1 NP_001103667.1 Accepted alive Link to Nucleotide Sequence:NM_001110197.1Link to Protein Sequence:NP_001103667.1Re-query CCDS DB by Nucleotide ID:NM_001110197Re-query CCDS DB by Protein ID:NP_001103667Link to BLAST:NP_001103667.1
Original member Current member NCBI NM_001110198.1 NP_001103668.1 Accepted alive Link to Nucleotide Sequence:NM_001110198.1Link to Protein Sequence:NP_001103668.1Re-query CCDS DB by Nucleotide ID:NM_001110198Re-query CCDS DB by Protein ID:NP_001103668Link to BLAST:NP_001103668.1
Original member Current member NCBI NM_001284279.1 NP_001271208.1 Accepted alive Link to Nucleotide Sequence:NM_001284279.1Link to Protein Sequence:NP_001271208.1Re-query CCDS DB by Nucleotide ID:NM_001284279Re-query CCDS DB by Protein ID:NP_001271208Link to BLAST:NP_001271208.1
Original member Current member NCBI NM_026518.4 NP_080794.2 Accepted alive Link to Nucleotide Sequence:NM_026518.4Link to Protein Sequence:NP_080794.2Re-query CCDS DB by Nucleotide ID:NM_026518Re-query CCDS DB by Protein ID:NP_080794Link to BLAST:NP_080794.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103666.1 359 Q9CZW6 359 100% 0 0
NP_001103667.1 359 Q9CZW6 359 100% 0 0
NP_001103668.1 359 Q9CZW6 359 100% 0 0
NP_001271208.1 359 Q9CZW6 359 100% 0 0
NP_080794.2 359 Q9CZW6 359 100% 0 0

Chromosomal Locations for CCDS 48529.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 29346809 29347883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 29354292 29354296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGAGATGGCCGGCTGTGGTGAAATTGATCACTCAATAAATATGCTTCCTACAAATAAGAAGGCAAATG
AGTCCTGTTCCAATACTGCACCTTCTCTGACAGTTCCTGAATGTGCCATTTGTCTACAAACATGTGTTCA
CCCTGTCAGTCTGCCCTGTAAGCATGTTTTCTGTTATCTGTGTGTAAAGGGTGCTTCATGGCTTGGGAAG
CGATGTGCTCTTTGTCGACAAGAGATTCCTGAGGATTTTCTTGACAAGCCAACCTTGTTGTCACCAGAAG
AACTTAAGGCTGCAAGCAGAGGAAATGGTGAATATGCGTGGTATTATGAAGGAAGGAATGGGTGGTGGCA
GTATGATGAGCGCACTAGTCGGGAGCTAGAAGATGCTTTTTCCAAAGGTAAAAAGAACACGGAAATGTTA
ATTGCTGGATTTCTGTATGTTGCTGATCTTGAAAACATGGTTCAATATAGGAGAAATGAACATGGACGTC
GCAGGAAGATTAAGCGAGATATAATAGATATACCAAAGAAGGGAGTAGCTGGACTTAGGCTGGACTGTGA
CACCAATACTGTAAATCTAGCAAGAGAGAGTTCTGCTGATGGTGCGGACAGTGGATCAGCACAGACTGGA
GCTTCTGTTCAGCTTGCAGTGCCATCTTCTACAAGGCCCCTGACATCAGTTGATGGTCAGTTAACCAGCC
CTGTAACACCATCCCCTGATGCAGGCATTTCTTTGGAAGACTCTTTTGCTCATTTACAACTCAGTGGAGA
CAGCATAGCTGAACGGAGTCACAGAGGTGAAGGAGAAGAAGATCATGAATCGCCATCTTCTGGCAGAGTA
CCAGATACCTCCGTTGAAGAAACAGAATCAGATGCCAGTAGTGATAGTGAGGATGCCCCTGTGGTAGTTG
CACAGCACTCTTTGACCCAACAGAGACCTTTGGTTCCAAATGGAAACCAGACAGTAGCCGACCAGTCAGA
CCGATCAGGAACTGACCGATCAGTTGCAGGGGGTGGGACCATGAGTGTCAATGTCAGATCCAGAAGGCCT
GATGGGCAGTGCACAGTGACAGAGGTTTAA

Translation (359 aa):
MEMAGCGEIDHSINMLPTNKKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK
RCALCRQEIPEDFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEML
IAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGLRLDCDTNTVNLARESSADGADSGSAQTG
ASVQLAVPSSTRPLTSVDGQLTSPVTPSPDAGISLEDSFAHLQLSGDSIAERSHRGEGEEDHESPSSGRV
PDTSVEETESDASSDSEDAPVVVAQHSLTQQRPLVPNGNQTVADQSDRSGTDRSVAGGGTMSVNVRSRRP
DGQCTVTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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