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Report for CCDS1571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1571.1 Public Homo sapiens 1 TRIM17 24 110 108 CCDS HistoryNCBI Gene:51127Re-query CCDS DB by CCDS ID:1571.1Re-query CCDS DB by GeneID:51127See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295033.7 ENSP00000295033.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295033.7Link to Ensembl Protein Viewer:ENSP00000295033.3Re-query CCDS DB by Nucleotide ID:ENST00000295033Re-query CCDS DB by Protein ID:ENSP00000295033
Original member Current member EBI ENST00000366697.6 ENSP00000355658.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366697.6Link to Ensembl Protein Viewer:ENSP00000355658.2Re-query CCDS DB by Nucleotide ID:ENST00000366697Re-query CCDS DB by Protein ID:ENSP00000355658
Original member Current member EBI ENST00000366698.7 ENSP00000355659.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366698.7Link to Ensembl Protein Viewer:ENSP00000355659.2Re-query CCDS DB by Nucleotide ID:ENST00000366698Re-query CCDS DB by Protein ID:ENSP00000355659
Original member Current member NCBI NM_001024940.3 NP_001020111.1 Accepted alive Link to Nucleotide Sequence:NM_001024940.3Link to Protein Sequence:NP_001020111.1Re-query CCDS DB by Nucleotide ID:NM_001024940Re-query CCDS DB by Protein ID:NP_001020111Link to BLAST:NP_001020111.1
Original member Current member NCBI NM_016102.4 NP_057186.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016102.4Link to Protein Sequence:NP_057186.1Re-query CCDS DB by Nucleotide ID:NM_016102Re-query CCDS DB by Protein ID:NP_057186Link to BLAST:NP_057186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020111.1 477 Q9Y577-1 477 100% 0 0
NP_057186.1 477 Q9Y577-1 477 100% 0 0

Chromosomal Locations for CCDS 1571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228408201 228408751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228409172 228409275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228409389 228409411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228410946 228411176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228413797 228413892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228414644 228415072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGAGGCTGTGGAACTCGCCAGAAAACTGCAGGAGGAAGCTACGTGCTCCATCTGTCTGGATTACTTCA
CAGACCCTGTGATGACCACCTGTGGCCACAACTTCTGCCGAGCCTGCATCCAGCTGAGCTGGGAAAAGGC
GAGGGGCAAGAAGGGGAGGCGGAAGCGGAAGGGCTCCTTCCCCTGCCCCGAGTGCAGAGAGATGTCCCCG
CAGAGGAACCTGCTGCCCAACCGGCTGCTGACCAAGGTGGCCGAGATGGCGCAGCAGCATCCTGGTCTGC
AGAAGCAAGACCTGTGCCAGGAGCACCACGAGCCCCTCAAGCTTTTCTGCCAGAAGGACCAGAGCCCCAT
CTGTGTGGTGTGCAGGGAGTCCCGGGAGCACCGGCTGCACAGGGTGCTGCCCGCCGAGGAGGCAGTGCAG
GGGTACAAGTTGAAGCTGGAGGAGGACATGGAGTACCTTCGGGAGCAGATCACCAGGACAGGGAATCTGC
AGGCCAGGGAGGAGCAGAGCTTAGCCGAGTGGCAGGGCAAGGTGAAGGAGCGGAGAGAACGCATTGTGCT
GGAGTTTGAGAAGATGAACCTCTACCTGGTGGAAGAAGAGCAGAGGCTCCTCCAGGCTCTGGAGACGGAA
GAAGAGGAGACTGCCAGCAGGCTCCGGGAGAGCGTGGCCTGCCTGGACCGGCAGGGTCACTCTCTGGAGC
TGCTGCTGCTGCAGCTGGAGGAGCGGAGCACACAGGGGCCCCTCCAGATGCTGCAGGACATGAAGGAACC
CCTGAGCAGGAAGAACAACGTGAGTGTGCAGTGCCCAGAGGTTGCCCCCCCAACCAGACCCAGGACTGTG
TGCAGAGTTCCCGGACAGATTGAAGTGCTAAGAGGCTTTCTAGAGGATGTGGTGCCTGATGCCACCTCCG
CGTACCCCTACCTCCTCCTGTATGAGAGCCGCCAGAGGCGCTACCTCGGCTCTTCGCCGGAGGGCAGTGG
GTTCTGCAGCAAGGACCGATTTGTGGCTTACCCCTGTGCTGTGGGCCAGACGGCCTTCTCCTCTGGGAGG
CACTACTGGGAGGTGGGCATGAACATCACCGGGGACGCGTTGTGGGCCCTGGGTGTGTGCAGGGACAACG
TGAGCCGGAAAGACAGGGTCCCCAAGTGCCCCGAAAACGGCTTCTGGGTGGTGCAGCTGTCCAAGGGGAC
CAAGTACTTATCCACCTTCTCTGCCCTAACCCCGGTCATGCTGATGGAGCCTCCCAGCCACATGGGCATC
TTCCTGGACTTCGAAGCCGGGGAAGTGTCCTTCTACAGTGTAAGCGATGGGTCCCACCTGCACACCTACT
CCCAGGCCACCTTCCCAGGCCCCCTGCAGCCTTTCTTCTGCCTGGGGGCTCCGAAGTCTGGTCAGATGGT
CATCTCCACAGTGACCATGTGGGTGAAAGGATAG

Translation (477 aa):
MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMSP
QRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQ
GYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALETE
EEETASRLRESVACLDRQGHSLELLLLQLEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTV
CRVPGQIEVLRGFLEDVVPDATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGR
HYWEVGMNITGDALWALGVCRDNVSRKDRVPKCPENGFWVVQLSKGTKYLSTFSALTPVMLMEPPSHMGI
FLDFEAGEVSFYSVSDGSHLHTYSQATFPGPLQPFFCLGAPKSGQMVISTVTMWVKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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