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Report for CCDS52919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52919.1 Public Mus musculus 9 Inka1 23 108 98 CCDS HistoryNCBI Gene:68176Re-query CCDS DB by CCDS ID:52919.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048568.5 ENSMUSP00000040433.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048568.5Link to Ensembl Protein Viewer:ENSMUSP00000040433.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048568Re-query CCDS DB by Protein ID:ENSMUSP00000040433
Original member NCBI NM_026597.3 NP_080873.2 Updated not alive Link to Nucleotide Sequence:NM_026597.3Link to Protein Sequence:NP_080873.2Re-query CCDS DB by Nucleotide ID:NM_026597Re-query CCDS DB by Protein ID:NP_080873
Current member NCBI NM_026597.4 NP_080873.2 Accepted alive Link to Nucleotide Sequence:NM_026597.4Link to Protein Sequence:NP_080873.2Re-query CCDS DB by Nucleotide ID:NM_026597Re-query CCDS DB by Protein ID:NP_080873Link to BLAST:NP_080873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080873.2 282 Q9CX62 282 100% 0 0

Chromosomal Locations for CCDS 52919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107984267 107985064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107985697 107985747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGCACAGCGCTCGGCTTGACAGCTTCCTGAGCCAGCTCCGCTGGGAACTGTTGTGTGCTCGGGACACAG
GCTCACCTCCAATGTCTGGCCCACTGCAACCAAAACCCAGAACTGATCAAAATGTACAGCCAAAGCGCCA
GTTCAGGGCCTCGGATGTTTTGGAAGAGGACTCTGTCTGCTGTGTAGAAGAGGAAGAGGAGGAAGGCTTG
GTAGCAGAAGACAAGGGTTTACCCTTGGGATGTCCTAGGGAGCATGCTCTAGACTGGGACTCTGGCTTCT
CCGAGGTGTCAGGCAGTACATGGCGAGAGGAAGAGCCGTCTGTACCCCAGCGCCAAGCACCTCGAGAACG
TCCACCTCATAGCCAGCGTTTCTCAGTCAGTGACATTCCTATGCGCAGTAGGGCAGCTGTAACCAACATA
CCTCCTGCCCACCGTCCGAGGCCCAAGTCCACCCCAGATGCTTGCCTGGAACATTGGCAGGGATTGGAAG
CAGAGGACTGGACGGCAGCCCTGCTGAACAGGGGCCGCAGTCGGCAGCCCCTGGTGCTAGGGGATAACTG
TTTTGCTGATTTAGTTCACAATTGGATGGAGTTGCCTGAAGCAACCAGTGAGGGGAGTGATGGAGATGTA
CCCCGAGCACGGGCTCGACCCCCTCAGTTCCTGCTTGGTCTCTCTGAGCAGCTACGGCGTAGGCTGGCCA
GGGCTCGACGGACAGCTATGGCAAGCAAGAGGTTGTCCTGCCCACCTCGCTCAGAACCTGACCTGCCTGC
AGACATCTCACGATTTGCAGCCCTCATGAACTGTCGAAGTCGCCAACCTATTATCTACAATGATGTCAGC
TACCTCTGA

Translation (282 aa):
MHSARLDSFLSQLRWELLCARDTGSPPMSGPLQPKPRTDQNVQPKRQFRASDVLEEDSVCCVEEEEEEGL
VAEDKGLPLGCPREHALDWDSGFSEVSGSTWREEEPSVPQRQAPRERPPHSQRFSVSDIPMRSRAAVTNI
PPAHRPRPKSTPDACLEHWQGLEAEDWTAALLNRGRSRQPLVLGDNCFADLVHNWMELPEATSEGSDGDV
PRARARPPQFLLGLSEQLRRRLARARRTAMASKRLSCPPRSEPDLPADISRFAALMNCRSRQPIIYNDVS
YL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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