NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28535.1 Public Mus musculus 17 Mcrip2 23 108 98 CCDS HistoryNCBI Gene:68241Re-query CCDS DB by CCDS ID:28535.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026828.6 ENSMUSP00000026828.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026828.6Link to Ensembl Protein Viewer:ENSMUSP00000026828.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026828Re-query CCDS DB by Protein ID:ENSMUSP00000026828
Original member Current member NCBI NM_026633.3 NP_080909.1 Accepted alive Link to Nucleotide Sequence:NM_026633.3Link to Protein Sequence:NP_080909.1Re-query CCDS DB by Nucleotide ID:NM_026633Re-query CCDS DB by Protein ID:NP_080909Link to BLAST:NP_080909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080909.1 160 Q9CQB2 160 100% 0 0

Chromosomal Locations for CCDS 28535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25863969 25864039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25864251 25864352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25864594 25864721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25868414 25868543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25868625 25868676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGTACACTATCACCAAGGGGCCCAGCAAGCTGGTCGCGCAGCGCCGCACAGGTCCCACACAGCAGCAGG
TGGAGAGCAGGCTTGGCGAGCTCCTGAAATGCCGGCAGCCGGTGCCGCCGACCGCGCTACCCGCGCACCT
GCAGCCCTCGGCACAGACTCAGGGACCCTGGCCCCTTGCAAGTTCTGGGCCAAGACTTGTATTCAATCGA
GTAAACGGCCGGCGACCCCTCACCACCTCCCCATCCCTCGAGGGGACCCAAGAGACCTACACAGTGGCCC
ACGAGGAGAACGTCCGATTTGTGTCCGAAGCCTGGCAGCAGGTAGAGCGACAACTGGATGGCGGCCCTGC
CGATGAGAGTGGCCCACGGCCTGTGCAGTATGTGGAGAGCACTCCTGATCCCCGGCTACAGAACTTTGTA
CCTATTGACCTCGATGAGTGGTGGGCACAGCAGTTTCTGGCTAAAATCACCAACTGTTCCTAG

Translation (160 aa):
MYTITKGPSKLVAQRRTGPTQQQVESRLGELLKCRQPVPPTALPAHLQPSAQTQGPWPLASSGPRLVFNR
VNGRRPLTTSPSLEGTQETYTVAHEENVRFVSEAWQQVERQLDGGPADESGPRPVQYVESTPDPRLQNFV
PIDLDEWWAQQFLAKITNCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH