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Report for CCDS38451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38451.1 Public Mus musculus 3 Ift80 23 108 98 CCDS HistoryNCBI Gene:68259Re-query CCDS DB by CCDS ID:38451.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029347.13 ENSMUSP00000029347.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029347.13Link to Ensembl Protein Viewer:ENSMUSP00000029347.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029347Re-query CCDS DB by Protein ID:ENSMUSP00000029347
Original member Current member EBI ENSMUST00000107812.7 ENSMUSP00000103442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107812.7Link to Ensembl Protein Viewer:ENSMUSP00000103442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107812Re-query CCDS DB by Protein ID:ENSMUSP00000103442
Original member Current member NCBI NM_026641.2 NP_080917.1 Accepted alive Link to Nucleotide Sequence:NM_026641.2Link to Protein Sequence:NP_080917.1Re-query CCDS DB by Nucleotide ID:NM_026641Re-query CCDS DB by Protein ID:NP_080917Link to BLAST:NP_080917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080917.1 777 Q8K057-1 777 100% 0 0

Chromosomal Locations for CCDS 38451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 68894071 68894181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68898485 68898608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68914612 68914784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68914894 68914983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68916092 68916263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68917957 68918104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68918490 68918625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68927727 68927791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68930822 68930985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68935847 68935921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68940086 68940204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68950354 68950533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68962180 68962317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68963623 68963712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68967847 68967956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68985415 68985483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68987884 68987994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68990742 68990963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 68994501 68994537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGAGACTGAAGATATCTCTCTCAAAGGAACCAAAGCATCAAGAATTAGTGAGCTGTGTGGGTTGGACTA
CGGCGGAGGAGCTGTACTCATGCAGTGACGACCACCAGATCGTCAAGTGGAACCTGCTAACCAGTGAAAC
CAGCCTAATAGTCAAGCTGCCTGATGACATCTACCCGATAGACCTTCACTGGTTTCCAAAGAGTTTAGGC
ATAAAGAAACAGACGCAGGCAGAAAGCTTCGTCCTCACAAGCTCTGATGGTAAGTTTCATCTGATTTCCA
AGTTAGGAAGAGTGGAAAAGAGTGTAGAAGCTCACTGTGGGGCTGTGCTCGCAGGACGATGGAATTATGA
GGGGACTGCATTAGTGACAGTTGGAGAAGATGGACAAGTGAAAATCTGGTCAAAGACAGGGATGCTCAGA
TCAACTTTAGCCCAGCAAGGAACACCAGTGTACTCAGTAGCCTGGGGCCCTGATTCAGAAAAGGTTCTTT
ATACAGCAGGCAAACAGCTCATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTGGAAAGCCCA
TGATGGCATCATTTTAAAAGTCGACTGGAACTCAGTGAATGACCTTATTTTATCTGCGGGTGAAGACTGT
AAGTATAAGGTTTGGGATAGTTATGGCCGCGTGCTGTACGGCTCCCAGCCTCATGAGCACCCCATCACCT
CAGTGGCCTGGGCTCCAGATGGGGAGTTATTTGCCGTTGGATCGTTTCATACGTTACGCTTGTGTGATAA
AACTGGGTGGTCATATGCTTTAGAGAAACCCAACACTGGCAGCATATTTAACATTGCGTGGTCTATTGAT
GGCACTCAGATCGCGGGAGCCTGTGGGAACGGGCATGTTGTCTTTGCACATGTGGTGGAGCAGCGCTGGG
AGTGGAAAAATTTTCAAGTAACGCTAACGAAGAGAAGGACCATGCAGGTTCGCAACGTTCTCAATGATGC
CGTGGATCTCCTGGAGTTCCGGGACAGAGTCATTAAAGCATCCTTAAACCACGCACACTTGGTGGTCTCC
ACGTCCCTGCAGTGCTACGTGTTCTCTACGAAGAACTGGAATACACCACTTATATTTGATCTCAAAGAAG
GAACTGTTAGTTTAATTCTGCAGGCAGAAAGACATTTTCTTCTGGTGGATGGCGGGGGTATCTACCTGCA
CTCTTATGAAGGGCGCTTCATTTCTTCTCCAAAGTTTCCTGGCATGAGAACAGACATCCTGAACGCTCAG
ACTGTGTCTCTGAGCAATGACACGATAGCAATAAAGGACAAAGCTGACGAGAAGATAATCTTCCTCTTTG
AGGCGTCAACTGGAAAACCCCTAGGGGATGGGAAACTTCTTTCTCATAAGAATGAAATCTCAGAAATTGC
TCTGGATCAAAAAGGACTTACCAATGACAGAAAAATTGCTTTCATTGACAAGAACAGAGATCTCTACATC
ACCTCTGTGAAACGATTTGGGAAAGAAGAACAGATTATTAAACTTGGAACCATGGTACATACTTTGGCAT
GGTGTGATACATGCAATATCCTCTGTGGAATTCAAGATACTCGATTCACAGTATGGTATTACCCTAATAC
CATTTATGTGGACAGAGACATTCTGCCTAAAACATTGTACGAAAGAGATGCAAGTGAATATAGTAAAAAC
CCGCATATAGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCTCCCTGGTGCACATCA
GCATATCACCGTACCCCGCCATCCTCCATGAGTATGTGAGCAGCTCCAAGTGGGAAGAGGCTGTAAGGCT
TTGCCGCTTTGTTAAGGAGCAAAGCATGTGGGCTTGCCTAGCGGCTATGGCTGTTGCTAATCGAGATATG
GTCACTGCAGAAATAGCCTATGCAGCAGTTGGGGAAATTGATAAAGTTCGGTACATCAATGCTATAAAAG
ATCTTCCATCTAGAGAGTCAAAAATGGCCCACATACTCATGTTTAGTGGGAACATCCAGGAGGCTGAAAC
AGTCCTGCTCCAGGCTGGCCTTGTTTATCAAGCCATACAGATCAACATTAATCTCTATAACTGGGAAAGG
GCGCTGGAGTTGGCTGTAAAATACAAAACCCACGTTGATACAGTGCTCGCTTATCGTCAGAAGTTCTTGG
ACACATTTGGTAAACAGGAAACTAATAAACGATATTTACAATATGCAGAGGGCCTCCAAATAGACTGGGA
GAAAATCAAAGCCAAAATTGAGATGGAAATTACTAAAGAACGAGACCGATCATCCAGCGGCCAGTCCAGC
AAGAGTGTGGGCTTAAAGCACTAA

Translation (777 aa):
MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETSLIVKLPDDIYPIDLHWFPKSLG
IKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGEDGQVKIWSKTGMLR
STLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDC
KYKVWDSYGRVLYGSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSID
GTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVS
TSLQCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLHSYEGRFISSPKFPGMRTDILNAQ
TVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEIALDQKGLTNDRKIAFIDKNRDLYI
TSVKRFGKEEQIIKLGTMVHTLAWCDTCNILCGIQDTRFTVWYYPNTIYVDRDILPKTLYERDASEYSKN
PHIVSFVGNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVANRDM
VTAEIAYAAVGEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQAIQININLYNWER
ALELAVKYKTHVDTVLAYRQKFLDTFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITKERDRSSSGQSS
KSVGLKH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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