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Report for CCDS25060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25060.1 Public Mus musculus 11 Vps53 23 108 98 CCDS HistoryNCBI Gene:68299Re-query CCDS DB by CCDS ID:25060.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056601.10 ENSMUSP00000061317.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056601.10Link to Ensembl Protein Viewer:ENSMUSP00000061317.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056601Re-query CCDS DB by Protein ID:ENSMUSP00000061317
Original member Current member NCBI NM_026664.4 NP_080940.2 Accepted alive Link to Nucleotide Sequence:NM_026664.4Link to Protein Sequence:NP_080940.2Re-query CCDS DB by Nucleotide ID:NM_026664Re-query CCDS DB by Protein ID:NP_080940Link to BLAST:NP_080940.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080940.2 832 Q8CCB4-1 832 100% 0 0

Chromosomal Locations for CCDS 25060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76046412 76046582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76047065 76047169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76048440 76048577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76062985 76063054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76066741 76066889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76076435 76076513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76077040 76077122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76081147 76081294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76082442 76082684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76092221 76092315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76101987 76102088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76113941 76114082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76117059 76117201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76117662 76117805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76121518 76121596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76134409 76134528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76136199 76136314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76138308 76138394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76163798 76163864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76166199 76166248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76174627 76174707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76179413 76179499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGATGGAGGAGGAGGAACTGGAGTTTGTGGAGGAGCTGGAGGCTGTGCTGCAGCTCACGCCAGAGGTGC
AACTCGCCATCGAGCAGGTATTCCCAAGCCAGGATCCTCTTGATCAAGCTGACTTCAATGCCGTTGAGTA
TATCAATACTCTGTTCCCAACAGAGCAATCTCTGGCAAACATTGACGATGTTGTGAACAAAATTAGACTG
AAAATAAGGAGACTGGATGACAATATCCGGACTGTCGTAAGAGGTCAGACAAATGTGGGGCAGGATGGAA
GGCAAGCACTTGAAGAGGCCCAGAAAGCCATTCAGCAACTCTTTGGCAAAATCAAGGATATCAAAGACAA
AGCAGAAAAGTCAGAACAAATGGTGAAAGAGATCACCCGAGATATTAAGCAGTTAGATCACGCCAAGCGC
CACCTGACCACCTCAATCACGACCCTGAACCACCTGCACATGCTGGCAGGCGGGGTGGACTCCCTGGAAG
CCATGACCAGGCGCAGACAGTATGGAGAAGTTGCTAATCTCCTTCAGGGTGTAATGAATGTTCTGGAGCA
CTTTCACAAATACATGGGAATCCCACAGATCCGACAGCTTTCTGAAAGGGTGAAGGCTGCACAGACAGAG
TTAGGACAGCAAATCCTGGCTGACTTTGAAGAAGCATTTCCTTCGCAGGGTACCAAGAGGCCGGGAGGAC
CCAGCAATGTCCTGAGAGATGCGTGCCTGGTGGCTAATATTTTGGACCCCAGAATCAAACAAGAAATCAT
CAAAAAGTTTATTAAACAGCATCTATCAGAGTATCTAGTACTTTTTCAAGAAAACCAAGATGTCGCCTGG
CTGGACAAAATTGACAGACGTTATGCTTGGGTGAAACGCCAGCTTGTGGACTATGAAGAGAAGTATGGCC
GGATGTTTCCTCGGGAGTGGTGCATGACGGAGAGGATCTCAGTAGAGTTTTGCCACGTGACGAGGGCAGA
ACTTTCCAAAATCATGCGTGCCAGAGCTAAGGAAATTGAAGTGAAATTGCTTCTTTTTGCGATCCAGAGA
ACAACCAACTTTGAGGGGTTTCTTGCAAAACGCTTCTCCGGTTGCACCCTGACAGATGGAACCCTGAAAA
AGCTGGAGTCCCCACCACCATCTACCAATCCTTTCCTGGAAGATGAGACAACACCAGAGATGGAGGAGCT
GGCTCTGGAGAAAGGAGAGTTAGAGCAACCGAAGAAGCCCAAGGCCCCGGACAACCCGTTCCACGGCATC
GTTTCCAAGTGTTTTGAGCCTCATCTCTACGTGTACATTGAGTCCCAGGACAAAAACCTCAGCGAGCTGA
TAGACCGGTTTGTGGCAGATTTCAAAGCCCAGGGCCCACCCAAGCCCAACACTGACGAAGGGGGTGCTGT
GCTCCCCAGCTGCGCTGACCTCTTTGTCTACTACAAGAAGTGCATGGTGCAGTGCTCACAGCTCAGCACA
GGCGAGCCCATGATCGCCCTGACTACCATCTTCCAGAAGTACCTCCGAGAATACGCCTGGAAAATCCTCT
CTGGCAACCTGCCTAAAACCAGCAGCAGCAGTGGGGGGCTGACCATCAGCAGCCTCCTCAAAGAGAAGGA
GGGCTCAGAAGTGGCCAGGTTCACTCTGGAGGAGCTGTGTCTCATCTGCAGCATCCTGAGCACAGCCGAG
TATTGTCTGGCTACCACCCAGCAGCTAGAAGAAAAACTCAAAGAAAAAGTTGATGTGAGCCTGACTGAAC
GAATTAATCTCACAGGAGAAATGGACACATTCAGCACTGTCATCTCCAGCAGCATCCAGCTGTTGGTTCA
AGATCTGGATGCAGCCTGTGACCCTGCCCTGATTGCCATGAGCAAGATGCCTTGGCAGAACGTGGAGCAT
GTTGGTGACCAGAGCCCTTATGTCACTTCTGTTATTCTTCACATTAAGCAAAACGTCCCCATCATCCGTG
ACAACCTGGCTTCCACACGGAAATACTTCACACAGTTCTGCATTAAATTTGCAAATTCGTTCATTCCCAA
ATTCATCACCCACCTCTTCAAGTGTAAGCCGATCAGCATGGTGGGAGCAGAGCAGCTTCTGCTGGACACC
CACTCCCTGAAGATGGTCCTGCTCGACCTTCCGTCCATTGGCTCCCAGGTGGTGAGGAAGGCCCCTGCCA
GTTACACTAAGATTGTCGTGAAAGGCATGACCCGGGCTGAAATGATCCTTAAGGTGGTGATGGCCCCTCA
TGAACCGTTGGTGGTATTTGTTGACAACTACATCAAACTCCTTACGGACTGCAACTCAGAAACCTTCCAG
AAAATACTGGATATGAAGGGGCTGAAGAGGAGTGAGCAGAGCAGCATGCTGGAACTTTTGCGGCAGAGGC
TCCCTGCCCCGCCCTCGGGGACAGAAGGTTCCAGCACCCTGTCGCTGATTGCCCCAACACCGGAGCAGGA
GTCATCCCGAATCCGCAAACTGGAGAAACTGATTAAAAAGAGACTGTAA

Translation (832 aa):
MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDQADFNAVEYINTLFPTEQSLANIDDVVNKIRL
KIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLDHAKR
HLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTE
LGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAW
LDKIDRRYAWVKRQLVDYEEKYGRMFPREWCMTERISVEFCHVTRAELSKIMRARAKEIEVKLLLFAIQR
TTNFEGFLAKRFSGCTLTDGTLKKLESPPPSTNPFLEDETTPEMEELALEKGELEQPKKPKAPDNPFHGI
VSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKKCMVQCSQLST
GEPMIALTTIFQKYLREYAWKILSGNLPKTSSSSGGLTISSLLKEKEGSEVARFTLEELCLICSILSTAE
YCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALIAMSKMPWQNVEH
VGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDT
HSLKMVLLDLPSIGSQVVRKAPASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQ
KILDMKGLKRSEQSSMLELLRQRLPAPPSGTEGSSTLSLIAPTPEQESSRIRKLEKLIKKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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