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Report for CCDS18828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18828.1 Public Mus musculus 4 Mul1 23 108 98 CCDS HistoryNCBI Gene:68350Re-query CCDS DB by CCDS ID:18828.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044058.10 ENSMUSP00000039604.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044058.10Link to Ensembl Protein Viewer:ENSMUSP00000039604.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044058Re-query CCDS DB by Protein ID:ENSMUSP00000039604
Original member Current member NCBI NM_026689.3 NP_080965.2 Accepted alive Link to Nucleotide Sequence:NM_026689.3Link to Protein Sequence:NP_080965.2Re-query CCDS DB by Nucleotide ID:NM_026689Re-query CCDS DB by Protein ID:NP_080965Link to BLAST:NP_080965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080965.2 352 Q8VCM5-1 352 100% 0 0

Chromosomal Locations for CCDS 18828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138434760 138434879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138437628 138437715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138438242 138438362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138438951 138439680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGAGAGCGGTTCGCGACCGTCGCTCGGCCAGGTCATCCTGCTGGGCACCAGTTCGATGGTCACCGCCG
TACTGTACTCCATATACCGGCAGAAGGCCCAGGTCGCGCAGGAACTCAAGGGAGCTAAGAAGATTCATCT
GGGTGAAGATTTAAAGGGCATTCTTTCAGAAGCACCGGGGAAGTGTGTGCCTTATGCTGTCATCGAAGGA
GCTGTGCGGTCTGTTAAAGAAACACTCAACAGCCAGTTCGTGGAAAACTGCAAGGGGGTGATCCAGCGGC
TGTCGCTTCAGGAGCATAAGATGGTGTGGAACCGAACTACCCACCTTTGGAATGACTATTCCAAGATCAT
TCACCAGAGGACTAACACTGTGCCCTTTGACCTCGTGCCCCACGAGGACGGCGTGGCTGTGTCCGTGCGA
GTGCTGAAGCCCCTGGATTCAGTGGATCTGGGCCTAGAGACCGTGTACGAGAAGTTCCACCCCTCTGTGC
AGTCCTTCACCGATGCCATCGGCCACTACATCAGTGGCGAGAGGCCCAAAGGCATCCAGGAGACAGAGGA
GATGCTGAAGGTGGGAGCCACCCTCACGGGGATCGGTGAACTGGTCCTGGACAACAACGCTGTCCGCCTG
CAGCCCCCCAAGCAGGGCATGCAGTACTACCTGAGCAGCCAGGACTTTGACAGCCTGCTGCACAGGCAGG
AGTCTAGTGTCCGGCTCTGGAAGATTCTGGTCCTGGTGTTCGGCTTTGCTACCTGTGCCACCCTCTTCTT
CATCCTGAGGAAGCAGTACCTTCATCGGCAGGAGCGCCTGCGCCAGCAGCAGCTCCAGGAAGAGTTCCTT
GAACACGAGGCCCAGCTGCTGAGTCAAGCCTCGCCTGAGGACAGGGAGAGTCTGAAGAGCGCCTGTGTTG
TGTGTCTGAGCAACTTCAAGTCCTGTGTCTTCCTCGAGTGCGGGCATGTGTGTTCCTGCCGCCAGTGTTA
CCTTGCCTTGCCAGAGCCCAAGAGGTGCCCGATCTGTCGGCGGGAGATCACCAGGGTGATACCCTTGTAT
AACAGCTAG

Translation (352 aa):
MESGSRPSLGQVILLGTSSMVTAVLYSIYRQKAQVAQELKGAKKIHLGEDLKGILSEAPGKCVPYAVIEG
AVRSVKETLNSQFVENCKGVIQRLSLQEHKMVWNRTTHLWNDYSKIIHQRTNTVPFDLVPHEDGVAVSVR
VLKPLDSVDLGLETVYEKFHPSVQSFTDAIGHYISGERPKGIQETEEMLKVGATLTGIGELVLDNNAVRL
QPPKQGMQYYLSSQDFDSLLHRQESSVRLWKILVLVFGFATCATLFFILRKQYLHRQERLRQQQLQEEFL
EHEAQLLSQASPEDRESLKSACVVCLSNFKSCVFLECGHVCSCRQCYLALPEPKRCPICRREITRVIPLY
NS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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