NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50351.1 Public Mus musculus 19 Ankrd13d 23 108 98 CCDS HistoryNCBI Gene:68423Re-query CCDS DB by CCDS ID:50351.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056888.12 ENSMUSP00000053783.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056888.12Link to Ensembl Protein Viewer:ENSMUSP00000053783.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056888Re-query CCDS DB by Protein ID:ENSMUSP00000053783
Original member Current member NCBI NM_026720.2 NP_080996.2 Accepted alive Link to Nucleotide Sequence:NM_026720.2Link to Protein Sequence:NP_080996.2Re-query CCDS DB by Nucleotide ID:NM_026720Re-query CCDS DB by Protein ID:NP_080996Link to BLAST:NP_080996.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080996.2 605 Q6PD24 605 100% 0 0

Chromosomal Locations for CCDS 50351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4270336 4270549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4270794 4270885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4270966 4271129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4271219 4271335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4271442 4271599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4272570 4272700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4272800 4272861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4273021 4273102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4273536 4273602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4280537 4280726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4280937 4281080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4281163 4281208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4281918 4282042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4282169 4282304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4282881 4282970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGCCGGCCTGGGCCCCACCTTCCCGCTGCACCGGCTAGTCTGGGCGAACCGGCACCGCGAACTGGAGG
CCGCACTGCACAGCCGCAAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGC
TGTGACCTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGC
CACCAGGGCTGGGCAGTCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCC
AGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCA
GGCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGGTACCTCTTGTGTCCAAGATGTGC
CCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTG
AGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGGAGGCGGGAGCCTTGGTGAT
GGAAGTGGATCATGACCGGCAGGTGGTGCACACAGAGACCCTAGCTCCAGCTCTGCATGAACCAGAAGCG
CTGCTGGCTGCCATGCGGCCTAGTGAGGAGCACGTGGCCAGTCGGCTCACCTCTCCTATTGTCTCCACCC
ACCTGGACACTCGCAATGTAGCCTTTGAGAGGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGAT
GGAGTCTGTTAGTGGCTACGAGGCAAAGGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGA
ACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAAGGGGGGAAGACTCCATTCCAGTCCTTCCTGG
GCATGGCCCAGCAGCACTCCTCCCACACTTTGGCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTAC
AGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATT
GAGATGTCTAGCAAAGTGCAGAGGTTCAAGGCAACACTGTGGCTAAGTGAGGAGCACCCACTGTCCTTGG
GTGACCAGGTGACACCCATCATTGACCTGATGGCCATCAGCAACGCTCATTTTGCCAAGCTACGGGATTT
CATCACTCTGCGTCTCCCACCAGGCTTCCCTGTCAAGATTGAGATTCCCCTCTTCCATGTGCTCAATGCC
CGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTT
CTGCCATTTCTGCTTCAGGAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGG
ATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCC
ATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAGGTGACGGTGTGGGAAGCCCTGACCAACA
CACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGCAGGCCCT
GCAGGAAAGCCTACAGCTGTCCACAGAGTCCAGGGGTCCAGAATCTCCTCAGAAGACACCTCCATCCCCT
GCACCCCCAAGCTTTGAGGAGCAGCTTCGCCTGGCCCTGGAGTTGTCTTCAAGGGAACAGGAGGAGTTGG
AGCGACGGGGTCAGCAGGAAGAAGACGACTTACAGCGGATCCTGCAGCTGTCACTCACAGAGCACTGA

Translation (605 aa):
MAGLGPTFPLHRLVWANRHRELEAALHSRKHDIEQEDPQGRTPLELAVTLGNLESVRVLLRHNANVGKES
HQGWAVLQEAVSTGDPEMVQLVLQYRDFQRATQRLAGIPELLNKLRQAPDFYVEMKWEFTSWVPLVSKMC
PSDVYRVWKRGESLRVDTSLLGFEHMTWQRGRRSFIFRGQEAGALVMEVDHDRQVVHTETLAPALHEPEA
LLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMESVSGYEAKVYSATNVELVTRTR
TEHLSDQDKLRNKGGKTPFQSFLGMAQQHSSHTLAPVQQAASPTNPTAISAEEYFDPSFSLESRNIGRPI
EMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNA
RITFSNLCGCDEPVSSVCVPNSSSAISASGSPFPCEVDPTVFEVPEGYSVLGAERSEPLRDEDDDLLQFA
IQQSLLEAGTEAEQVTVWEALTNTRPGIHPPPRVTVFEEQLQLEQALQESLQLSTESRGPESPQKTPPSP
APPSFEEQLRLALELSSREQEELERRGQQEEDDLQRILQLSLTEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH