CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS16104.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16104.2 |
Public |
Mus musculus |
2 |
Ubr3 |
23 |
108 |
98 |
|
Public Note for CCDS 16104.1 |
The coding region has been updated to represent an alternative and significantly longer C-terminus that is more supported by available transcript and homology data, and by experimental data in PMID:17462990. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 16104.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000055758.15 |
ENSMUSP00000060159.9 |
Accepted |
alive |
|
|
|
NCBI |
NM_177783.6 |
NP_808451.2 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_808451.2 |
1889 |
Q5U430-1 |
1889 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 16104.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5670 nt): ATGGCGGCGGCGGCGGCCGCGGCGGCCGTCGGGGACCCGCAGCCGCCCCAGCCGGAGGCGCCGGCGCAGG GGCTGGCTTTAGACAAAGCGGCCACCGCCGCTCATCTGAAGGCCGCTCTCAGCCGGCCGGATAACCGTGC GGGCGCCGAGGAGCTGCAGGCGCTGCTGGAGAGGGTGCTGAACGCCGAGCGGCCGCTGGCCGGGGCTGCG GGCGGCGAGGAGGCGGCGGGCGGCGGCGGCGGCGGCCCGGGCGAGGCGGAGGAGGATGCCCTGGAGTGGT GTAAGTGCCTTCTGGCCGGCGGCGGCGGCTACGAGGAGTTCTGCGCGGCCGTGCGGGCCTACGACCCCGC GGCGCTCTGCGGCCTGGTCTGGACGGCCAACTTCGTGGCCTACCGCTGCCGGACGTGCGGCATCTCCCCC TGCATGTCGCTGTGCGCGGAGTGCTTCCACCAGGGCGACCACACTGGACACGACTTCAACATGTTCCGCA GCCAGGCCGGGGGCGCCTGCGACTGCGGGGACAGCAACGTAATGCGGGAGAGCGGGTTTTGTAGAAGACA TCAGATTAAATCAAGTTCAAATATTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGAATTTGTTCTT CCAAGATTCATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGAACCAGCAGCTGATGCACCAT CAGAAAAAGATCTGAACAAAGTCCTTCAGCTTTTGGAGCCTCAGATTTCCTTTTTAGAAGACCTGACTAA AATGGGAGGAGCCATGAGGTCTGTTCTTACTCAGGTGTTAACCAACCAGCAGAACTACAAAGACCTGACT GCGGGTCTTGGAGAAAATGCTTGTGCAAAGAAAAGTCACGAGAAGTACCTTATAGCTTTGAAGAGCTCCG GACTGACATATCCCGAGGATAAGCTGGTGTATGGGGTCCAGGAACCAGCTGCTGGTACTAGCACTCTGGC AGCTCAAGGTTTTGCAGGTGCTACTGGAACACTGGGGCAGATAGACTCTTCAGATGAGGAGGACCAGGAT GGGAGTCAAGGCTTGGGCAAGAGAAAGAGGGTGAAGCTAAGCAGTGGCACCAAAGATCAATCCATAATGG ATGTTTTGAAACATAAAAGTTTTTTAGAAGAACTATTATTTTGGACAATAAAGTATGAGTTCCCACAGAA GATGGTAACTTTCTTGCTCAATATGCTCCCAGATCAAGAGTATAAGGTTGCTTTTACAAAAACATTTGTT CAGCATTATGCTTTTATTATGAAAACACTGAAGAAAAGTCACGAATCAGATACAATGTCCAACAGAATTG TGCATATTAGTGTTCAGTTGTTCAGCAATGAGGAGCTAGCCAGACAGGTGACAGAAGAGTGTCAGCTCCT GGACATCATGGTCACTGTGTTGTTGTACATGATGGAGAGCTGCCTCATCAAGAGTGAGCTGCAAGATGAA GAGAACAGTTTACATGTAGTGGTGAACTGTGGAGAAGCCTTACTGAAGAATAACACCTACTGGCCCCTTG TCAGTGATTTTATTAATATTCTTTCTCATCAAAGTGTGGCTCAGAGGTTTCTGGAGGATCACGGCCTGTT AGTTACATGGATGAACTTTGTGTCTTTCTTTCAAGGTATGAACTTGAACAAGCGAGAGCTCAATGAGCAC GTGGAATTTGAGTCTCAGACCTACTATGCTGCCTTTGCTGCTGAGCTGGAAGCCTGTGCACAACCCATGT GGGGGCTTTTATCACATTGTAAAGTTAGGGAAACTCAAGAGTATACCAGGAATGTTGTAAGGTACTGCCT TGAAGCTCTTCAAGATTGGTTTGATGCTATTAACTTTGTAGACGAGCCAGCTCCTAACCAAGTCACTTTC CACCTACCACTGCACCGCTACTATGCTATGTTTTTGAGTAAGGCTGTGAAATGTCAAGAACTAGATTTGG ATTCACTTTTACCGGATCAGGAAATGTTAATGAAACTAATGATTCACCCACTCCAAATTCAAGCTAGTCT TGCTGAAATTCACAGTAACATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACCTATGTC CAGTCTCATTTCTGTAACTCCATGATTGACCCAGACATTTACTTACTACAGGTCTGTGCTTCTAGACTTG ACCCAGACTACTTTATATCATCTGTCTTTGAAAGATTTAAGGTGGTGGACTTACTGACCATGGCTTCACA GCACCACAACATGGTGCTCGATGTGGAGCACGAGCGGTCGATGCTAGAGGGTGCTCTCACGTTCCTCGTG ATTCTTTTGAGTCTTCGTTTACACCTAGGGATGTCTGACGATGACATTCTCAGGGCAGAGATGGTGGCCC AGCTGTGTATGAACGACAGGACACATAGCTCTTTGCTTGACCTCATCCCAGAAAATCCCAACCCCAAAAG TGGCATTATTCCTGGAAGTTATAGCTTTGAATCAGTTTTATCTGCTGTAGCGGACTTTAGGGCTCCCATT TTTGAACCTGGAGGCTCTATGCAACAAGGCATGTACACTCCCAAAGCTGAAGTCTGGGATCAGGAGTTTG ATCCTGTCATGGTCATTCTTCGAACCGTTTACCGCCGAGACGTGCAGTCTGCAATGGACAGATACACAGC ATTTTTAAAACAGAGTGGAAAATTCCCTGGCAATCCCTGGCCTCCGTATAAGAAAAGAACATCACTCCAT CCCAGCTATAAAGGTCTTATGAGACTTCTGCACTGTAAAACTTTACACATCGTGCTCTTCACTCTGCTTT ACAAGATTCTGATGGATCATCAAAATCTGTCTGAGCATGTGCTGTGCATGGTCTTGTACCTGATTGAGTT AGGCCTGGAGAACTCTGCTGACGATGACTCCGAGGAAGAGGTATCAATGGGTGGACCAGAGCGTTGTCAT GACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAG TCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTT ACAAAATTCTGGTACAGCTCAAGTTTTCAGCTTAGTAGCAGAGCGTAGAAAGAAATTTCAGGAGATCATC AATCGCAGCAACAGTGAAGCAAATCAGGTGGTTCGGCCCAAGATTCCAAGTAAATGGTCAGCTCCTGGTT CCTCTCCCCAGTTAACCACAGCCATTTTGGAAATTAAGGAAAGCATATTGTCTTTGCTAATAAAACTTCA CCACAAACTCTCAGGAAAACAAAACTCTTACTATCCTCCATGGCTTGATGACATAGAAGTTTTAATACAA CCAGAAATTCCCAAATACAATCATGGAGATGGTATAACTGCTGTAGAAAGGATTTTGCTAAAAGCTGCAG TGCAAAGCAGAATGAACAAGCGCATCATTGAGGAGATATGCAGAAAAGTGACCCCTCCTGTGCCACCCAA AAAAATCACCGCAGCGGAGAAGAAAACTCTGGACAAGGAGGAAAGGCGACAAAAGGCTAGAGAAAGGCAG CAGAAATTGCTCGCAGAGTTTGCCTCACGACAGAAAAGCTTTATGGAAACTGCAATGGATGTTGATTCTC CTGAGAACGATATTCCTATGGAAATTACCACAGCAGAACCACAAGTTTCTGAGGCCGTGTATGACTGTGT TATTTGTGGACAGAGTGGTCCTTCTTCTGAAGACAGACCTACAGGACTGGTTGTACTGTTACAAGCATCA TCAGTTTTAGGCCAGTGCCGGGACAATGCTGAGCCAAAAAAGTTGCCGATCGCTGAAGAGGAGCAGATTT ACCCTTGGGACACATGTGCAGCAGTTCATGATGTGAGGCTTTCATTACTGCAGCGTTATTTTAAAGATAG TTCTTGCCTTTTGGCAGTATCAATTGGCTGGGAAGGAGGTGTTTATGTACAAACTTGTGGCCACACGTTG CACATAGATTGTCATAAATCCTATATGGAGTCGTTACGGAATGACCAGGTTCTTCAGGGCTTCTCAGTGG ACAAAGGAGAATTCACGTGTCCCCTCTGTAGACAGTTTGCCAACAGTGTTCTTCCATGTTATCCTGGAAG CAATGTGGAAAATAACCTTTGGCAACGCCCTTGTAACAAAAGCACGCAAGATCTCATAAAGGAAGTGGAA GAGCTGCAGGGACGGCCGGGAGCTTTCCCATCAGAAACCAACTTAAGTAAAGAAATGGAATCTGTAATGA AAGATATAAAAAATACCACTCAGAAGAAATACAGAGACTATAGCAAGACCCCAGGCTCACCAGACAACGA GTTTCTCTTTATGTACTCTGTTGCTAGAACCAATCTGGAGCTGGAACTGATTCATAGAGGAGGCAGTCTC TGCTCCGGTGGTCCAAGCACAGCGGGGAAAAGATCTTGTCTGAATCAGCTGTTCCATGTATTAGCCTTGC ACATGCGGCTTTATACCATTGATTCTGAATATAATCCATGGAAAAAACTCACCCAGTTAGTGGAAGATAT GAATTCACAGGTGGGGAATGAAGACCAGCAGCCAGAAGTTCCAATTCTTTATCATGATGTGACATCCCTT CTGCTCATCCAGATCTTAATGATGCCACAACCCTTACGTAAAGAGCACTTCACCTGCATTGTGAAAGTAC TCTTCACCCTGCTGTACACACAGGCCCTGGCGGCGCTCTCAGTTAAGGGCACTGAAGAGGACCGGTCAGC CTGGAAACACGCCGGGGCTCTTAGAAAGGATACATGTGATGCAGAAAAGTGTTACGAAGTGCTGTTGAGC TTTGTTATAAGTGAGCTGTCTAAAGGGAAGTTATATTATGAAGAAGGCGCTCAGGAGTGTGCGATGGTCA GTCCTATTGCTTGGTCTCCTGAGTCCATGGAAAGATACATACAGGATTTCTGCTTGCCTTTCCTCAGGGT CAGCAGCCTTCTTCAGCACCACCTCTTTGGGGAAGACTTACCCAGTTGCCAGGAAGAAGAAGAATTTTCA GTCCTTGCCAGCTGCCTGGGACTTCTGCCAACTTTTTACCAAACAGATCACCCGTTCATCAGTGCCTCGT GTCTGGACTGGCCAGTTGCAGCGTTTGACATTATAACTCAGTGGTGTTTTGAGATAACATCATTTACGGA GAGACACGCAGAGCAAGGAAAGGCCTTGCTTATCCAAGAATCAAGATGGAAGTTACCACACCTGTTACAG TTGCCTGAGAATTACAACACTATTTTTCAGTACTATCATAGAAAAACCTGCAGTGTCTGCACCAAGGTTC CTAAAGACCCAGCTGTTTGCCTCGTCTGCGGCACTTTCGTATGCCTGAAAGGCCTGTGCTGCAAGCAGCA AAGTTACTGTGAATGTGTGCTGCATTCTCAGAATTGTGGTGCAGGAACAGGAATTTTCCTTTTAATCAAC GCGTCAGTGATCATCATCATCCGAGGCCACCGCTTTTGCCTCTGGGGTTCCGTCTACTTGGATGCTCATG GAGAAGAGGACCGGGACCTCAGGCGAGGCAAGCCTCTCTACATCTGTGAGGAGCGGTACAGAGTTCTCGA GCAGCAGTGGGTTTCCCACACGTTTGACCACATCAATAAAAGATGGGGTCCGCACTACAATGGGCTGTGA
Translation (1889 aa): MAAAAAAAAVGDPQPPQPEAPAQGLALDKAATAAHLKAALSRPDNRAGAEELQALLERVLNAERPLAGAA GGEEAAGGGGGGPGEAEEDALEWCKCLLAGGGGYEEFCAAVRAYDPAALCGLVWTANFVAYRCRTCGISP CMSLCAECFHQGDHTGHDFNMFRSQAGGACDCGDSNVMRESGFCRRHQIKSSSNIPCVPKDLLMMSEFVL PRFIFCLIQYLREGYNEPAADAPSEKDLNKVLQLLEPQISFLEDLTKMGGAMRSVLTQVLTNQQNYKDLT AGLGENACAKKSHEKYLIALKSSGLTYPEDKLVYGVQEPAAGTSTLAAQGFAGATGTLGQIDSSDEEDQD GSQGLGKRKRVKLSSGTKDQSIMDVLKHKSFLEELLFWTIKYEFPQKMVTFLLNMLPDQEYKVAFTKTFV QHYAFIMKTLKKSHESDTMSNRIVHISVQLFSNEELARQVTEECQLLDIMVTVLLYMMESCLIKSELQDE ENSLHVVVNCGEALLKNNTYWPLVSDFINILSHQSVAQRFLEDHGLLVTWMNFVSFFQGMNLNKRELNEH VEFESQTYYAAFAAELEACAQPMWGLLSHCKVRETQEYTRNVVRYCLEALQDWFDAINFVDEPAPNQVTF HLPLHRYYAMFLSKAVKCQELDLDSLLPDQEMLMKLMIHPLQIQASLAEIHSNMWVRNGLQIKGQAMTYV QSHFCNSMIDPDIYLLQVCASRLDPDYFISSVFERFKVVDLLTMASQHHNMVLDVEHERSMLEGALTFLV ILLSLRLHLGMSDDDILRAEMVAQLCMNDRTHSSLLDLIPENPNPKSGIIPGSYSFESVLSAVADFRAPI FEPGGSMQQGMYTPKAEVWDQEFDPVMVILRTVYRRDVQSAMDRYTAFLKQSGKFPGNPWPPYKKRTSLH PSYKGLMRLLHCKTLHIVLFTLLYKILMDHQNLSEHVLCMVLYLIELGLENSADDDSEEEVSMGGPERCH DSWFPGSNLVSNMRHFINYVRVRVPETAPELKRDPLASTSSDALDSLQNSGTAQVFSLVAERRKKFQEII NRSNSEANQVVRPKIPSKWSAPGSSPQLTTAILEIKESILSLLIKLHHKLSGKQNSYYPPWLDDIEVLIQ PEIPKYNHGDGITAVERILLKAAVQSRMNKRIIEEICRKVTPPVPPKKITAAEKKTLDKEERRQKARERQ QKLLAEFASRQKSFMETAMDVDSPENDIPMEITTAEPQVSEAVYDCVICGQSGPSSEDRPTGLVVLLQAS SVLGQCRDNAEPKKLPIAEEEQIYPWDTCAAVHDVRLSLLQRYFKDSSCLLAVSIGWEGGVYVQTCGHTL HIDCHKSYMESLRNDQVLQGFSVDKGEFTCPLCRQFANSVLPCYPGSNVENNLWQRPCNKSTQDLIKEVE ELQGRPGAFPSETNLSKEMESVMKDIKNTTQKKYRDYSKTPGSPDNEFLFMYSVARTNLELELIHRGGSL CSGGPSTAGKRSCLNQLFHVLALHMRLYTIDSEYNPWKKLTQLVEDMNSQVGNEDQQPEVPILYHDVTSL LLIQILMMPQPLRKEHFTCIVKVLFTLLYTQALAALSVKGTEEDRSAWKHAGALRKDTCDAEKCYEVLLS FVISELSKGKLYYEEGAQECAMVSPIAWSPESMERYIQDFCLPFLRVSSLLQHHLFGEDLPSCQEEEEFS VLASCLGLLPTFYQTDHPFISASCLDWPVAAFDIITQWCFEITSFTERHAEQGKALLIQESRWKLPHLLQ LPENYNTIFQYYHRKTCSVCTKVPKDPAVCLVCGTFVCLKGLCCKQQSYCECVLHSQNCGAGTGIFLLIN ASVIIIIRGHRFCLWGSVYLDAHGEEDRDLRRGKPLYICEERYRVLEQQWVSHTFDHINKRWGPHYNGL
|