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Report for CCDS18880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18880.1 Public Mus musculus 4 Ddi2 23 108 98 CCDS HistoryNCBI Gene:68817Re-query CCDS DB by CCDS ID:18880.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102484.4 ENSMUSP00000099542.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102484.4Link to Ensembl Protein Viewer:ENSMUSP00000099542.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102484Re-query CCDS DB by Protein ID:ENSMUSP00000099542
Original member Current member NCBI NM_001017966.2 NP_001017966.1 Accepted alive Link to Nucleotide Sequence:NM_001017966.2Link to Protein Sequence:NP_001017966.1Re-query CCDS DB by Nucleotide ID:NM_001017966Re-query CCDS DB by Protein ID:NP_001017966Link to BLAST:NP_001017966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017966.1 399 A2ADY9 399 100% 0 0

Chromosomal Locations for CCDS 18880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141689315 141689331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141692255 141692444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141695407 141695510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141698730 141698858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141703112 141703239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141705932 141706058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141708220 141708456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141713397 141713526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141723057 141723194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGCTGCTCACCGTGTACTGTGTGCGGAGGGACCTCTCCGAGGTGACCTTTTCCCTCCAGGTCGACGCCG
ACTTCGAGCTGCACAACTTCCGCGCGCTGTGCGAGCTCGAGTCCGGCATCCCCGCCGCCGAGAGCCAGAT
TGTCTATGCAGAAAGGCCTCTCACCGACAACCACAGGTCACTGGCTTCTTACGGTTTAAAAGATGGTGAT
GTTGTGATTCTACGACAGAAGGAGAATGCAGACCCTCGCCCTGCAGTGCAGTTCTCAAACTTACCCCGGA
TTGACTTCAGTAGCATAGCTGTGCCTGGCACGTCAAACCCCCAACAGCGCCAGCTGCCCAGAACCCAGGC
TCAGCACTCATCTCCTGGGGAAATGGCATCTTCTCCTCAAGGCCTAGACAACCCAGCCCTGCTCCGAGAC
ATGCTGCTGGCCAACCCGCATGAGTTGTCCTTGCTGAAGGAGCGCAACCCACCCTTGGCGGAAGCTCTGC
TCAGTGGAGATCTTGAGAAATTCTCTAGGGTCTTGGTGGAGCAGCAGCAGGACCGAGCCCGGAGAGAACA
AGAACGGATTCGTCTGTTTTCTGCTGACCCCTTTGATCTCGAAGCTCAGGCAAAGATAGAAGAAGATATA
AGGCAGCAGAACATCGAGGAGAACATGACGATAGCTATGGAGGAGGCCCCGGAGAGCTTCGGCCAGGTCG
CCATGCTGTACATCAACTGCAGAGTGAACGGGCATCCTGTGAAAGCCTTTGTCGACTCAGGAGCCCAGAT
GACTATTATGAGCCAGGCCTGTGCAGAAAGGTGTAACATAATGAGACTGGTAGATCGTCGGTGGGCTGGC
ATTGCCAAAGGAGTAGGCACACAGAAGATTATTGGAAGGGTGCATCTAGCTCAGGTTCAGATTGAAGGCG
ATTTTCTGGCGTGCTCCTTCTCAATTCTGGAAGAACAGCCTATGGACATGCTTCTGGGTCTGGACATGCT
GAAACGGCACCAGTGTTCTATTGACTTGAAGAAAAATGTTCTGGTGATTGGCACCACGGGCTCACAGACC
ACCTTCCTTCCTGAGGGGGAGTTACCAGAGTGTGCTCGTTTGGCATATGGAACCGGGCGAGAGGACATAC
GGCCAGAGGAAATTGCAGACCAAGAATTAGCAGAAGCCATTCAAAAATCAGCCGAGGATGCAGAGCGTCA
GAAGCCATGA

Translation (399 aa):
MLLTVYCVRRDLSEVTFSLQVDADFELHNFRALCELESGIPAAESQIVYAERPLTDNHRSLASYGLKDGD
VVILRQKENADPRPAVQFSNLPRIDFSSIAVPGTSNPQQRQLPRTQAQHSSPGEMASSPQGLDNPALLRD
MLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDI
RQQNIEENMTIAMEEAPESFGQVAMLYINCRVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAG
IAKGVGTQKIIGRVHLAQVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVLVIGTTGSQT
TFLPEGELPECARLAYGTGREDIRPEEIADQELAEAIQKSAEDAERQKP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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