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Report for CCDS19601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19601.1 Public Mus musculus 5 Srrm4 23 108 98 CCDS HistoryNCBI Gene:68955Re-query CCDS DB by CCDS ID:19601.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076124.6 ENSMUSP00000075488.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076124.6Link to Ensembl Protein Viewer:ENSMUSP00000075488.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076124Re-query CCDS DB by Protein ID:ENSMUSP00000075488
Original member NCBI NM_026886.3 NP_081162.1 Updated not alive Link to Nucleotide Sequence:NM_026886.3Link to Protein Sequence:NP_081162.1Re-query CCDS DB by Nucleotide ID:NM_026886Re-query CCDS DB by Protein ID:NP_081162
Current member NCBI NM_026886.4 NP_081162.1 Accepted alive Link to Nucleotide Sequence:NM_026886.4Link to Protein Sequence:NP_081162.1Re-query CCDS DB by Nucleotide ID:NM_026886Re-query CCDS DB by Protein ID:NP_081162Link to BLAST:NP_081162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081162.1 608 Q8BKA3-1 608 100% 0 0

Chromosomal Locations for CCDS 19601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 116444568 116444874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116446490 116446624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116447254 116447364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116449424 116449627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116453409 116453713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116467432 116467588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116467768 116467860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116471242 116471292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116472507 116472533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116475176 116475247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116477059 116477145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116482390 116482536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116591334 116591464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGCTAGCCTGCAGCAGGGCGAGAAACAGCTGTTTGAGAAGTTCTGGAAAGGGACCTTCAAAGCAGTGG
CCACTCCGCGTCCCGAGAGCATCATCGTCGCCAGTATCACAGCCCGCAAGCCGATGCCAAGGACAGAGCC
CCAGAGCAGTCTCTTGCTCCCAGATCAGGATGGACCTTCAGAAAAGCTGGGCCAACATCTGGCCCCTGAG
GCCCTGGGTACCAACAGCTGGGGAAGAGAGAAGGCCTGCAGGGAACTGGATCCTGCCAGAGCACACAGTG
CCTCTCAAGACAGAGACCCGACACCACCACCTTCCTCCAGGGGGAAAAAGAAAAAGAAGAAATCAACCAG
GAAAAAGAGGAGGAGGTCCCCGTCCTACAGCCCATCACCAGTCAAGAAGAAGAAGAAGAAAAGCTCCAAG
AAACATAAGCGACACAGGTCTTTCTCCAAGAAAAGGAGACACAGCTCCTGTAGCCCTAAAAGCAAAAGAC
GGGAAGAGAAGAGGCACAAAAAACAATCTCGAAGCCGGAAGTCTCACCGACATAGACATCACCGATGCCC
CTCAAGGTCCCAGAGTTCGGAACTGCGCTCCCCCAGCTGCGAGAGCAGGCATCGAGGTCGGTCCCCTGAG
GAAGGGCGGAAATCCCGCCGAACACACTCCCGCCGCTGCTCCAAGAACCACTGCAAGGTCAGCCCAGACG
CCCGGTCCAGCCACCTGCCCAGCCAGCCCCTCCCGAGGCTCGGCTTCCTGTCAGCCAGGGGTGTAATCAC
TGGGTCGGGGTCCGCGGCTGACCTCTTTAGCAAATCGGCCAGCCCTCTCGCCGCCACCCGAGGGCGCTCG
CAGGAGTACGACTCGGGCAATGACACGTCCTCGCCGCCCTCCACGCAAACCAGCTCGGCCAGGTCTCGGG
GCCAGGAGAAGGGGAGTCCCGGTGGGGATCTAAGCAAGAGTCGAGACCTCAACTGTGGCAACACCTCCGA
TTCAGGGAACTCCTTCACCACCTCCTCCCCCCAGAACAAGGGGGCTGTCTTGGAGACTGTCTCTCCCGCC
TGCAGGAGCAGAGAGTCAAGAGGGTTTCAGTCCCCATGTCTCCAGTGTGCAGAGGTGAAGAAGTCTAGTT
TGGTCCCATCCACAGCCCGGAGCTCCCCCATCAAAGAGTGCTCCCGTAGCTCCTCCTACACCAGCACTCG
ATCCTCCAGTCCCTCATCCAGGTCCCCAAACCCCAGAGCTTCCCCCAGGTACACCCGGAGTCGGTCCACC
TCCTCTGAAAAAAGGTCCTACTCTCGCTCTCCCAGCTATTCGTCCAAGTCTGGCAAGAGGAGCCCACCTA
GCAGAAGCTCCAGGTCTCGTCGAAGTCCCAGCTACTCTCGCTACAGCCCCAGCAGGGAACGGGACCTAAA
GTATGGTGAGAAAGAACCACAGCCCCGAGAACGTGCGCGCAGGAGGCGACGGTCCTACTCACCCATGAGG
AAGCGCAGGAGAGACTCCCCAAGCCACCTGGAGGCTCGGAGGATAACCAGTGCCCGCAAACGCCCCATCC
CCTACTACCGACCCAGCCCCTCCTCGTCCAGCAGCCTCAGCAGCGCCTCCTCCTGGTACAGCAGCAGCAG
CAGCAGCAGCAGCAGTAGCAGCCGCTCCCCTAGCCGCAGTTACTCCCGGAGCCGGAGTCCCAGTCGGAGC
CACAGCAGCCGGAGCCAGACCCGGAGCAGGACGCGGACCAGCCGCAGCTCCAGTTCTCGCAGCCTCAGCC
TGGGCTCCCGGAGCCGCAGTCGGAACCGGAGCCTGAGCTACAGCTCGGCAGAAAGCTATGCCAGCACGAG
GCGCTAA

Translation (608 aa):
MASLQQGEKQLFEKFWKGTFKAVATPRPESIIVASITARKPMPRTEPQSSLLLPDQDGPSEKLGQHLAPE
ALGTNSWGREKACRELDPARAHSASQDRDPTPPPSSRGKKKKKKSTRKKRRRSPSYSPSPVKKKKKKSSK
KHKRHRSFSKKRRHSSCSPKSKRREEKRHKKQSRSRKSHRHRHHRCPSRSQSSELRSPSCESRHRGRSPE
EGRKSRRTHSRRCSKNHCKVSPDARSSHLPSQPLPRLGFLSARGVITGSGSAADLFSKSASPLAATRGRS
QEYDSGNDTSSPPSTQTSSARSRGQEKGSPGGDLSKSRDLNCGNTSDSGNSFTTSSPQNKGAVLETVSPA
CRSRESRGFQSPCLQCAEVKKSSLVPSTARSSPIKECSRSSSYTSTRSSSPSSRSPNPRASPRYTRSRST
SSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDLKYGEKEPQPRERARRRRRSYSPMR
KRRRDSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRSRSPSRS
HSSRSQTRSRTRTSRSSSSRSLSLGSRSRSRNRSLSYSSAESYASTRR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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