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Report for CCDS39413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39413.1 Public Mus musculus 5 Rfc3 23 108 98 CCDS HistoryNCBI Gene:69263Re-query CCDS DB by CCDS ID:39413.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038131.9 ENSMUSP00000039621.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038131.9Link to Ensembl Protein Viewer:ENSMUSP00000039621.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000038131Re-query CCDS DB by Protein ID:ENSMUSP00000039621
Original member NCBI NM_027009.2 NP_081285.1 Updated not alive Link to Nucleotide Sequence:NM_027009.2Link to Protein Sequence:NP_081285.1Re-query CCDS DB by Nucleotide ID:NM_027009Re-query CCDS DB by Protein ID:NP_081285
Current member NCBI NM_027009.3 NP_081285.1 Accepted alive Link to Nucleotide Sequence:NM_027009.3Link to Protein Sequence:NP_081285.1Re-query CCDS DB by Nucleotide ID:NM_027009Re-query CCDS DB by Protein ID:NP_081285Link to BLAST:NP_081285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081285.1 356 Q8R323 356 100% 0 0

Chromosomal Locations for CCDS 39413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151642912 151643103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151643711 151643780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151644613 151644711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151644790 151644926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151645518 151645699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151647439 151647536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151648245 151648312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151649872 151650009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151651066 151651152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAGCCTCTGGGTGGACAAGTACCGGCCGAGCTCCCTTGCCCGGCTGGACTATCATAAGGAACAGGCAG
CACAGCTGCGCAACCTGGTGCAGTGTGGAGACTTTCCTCACCTCTTAGTATATGGACCATCAGGTGCTGG
AAAAAAGACAAGAATTATGTGTATTCTACGTGAACTTTATGGTATCGGGGTGGAAAAACTGAGAATTGAG
CATCAGACTATCACAACCCCGTCTAAAAAAAAAATTGAAATCAGCACCATTGCAAGCAACTACCACCTTG
AAGTTAATCCCAGTGATGCGGGGAACAGCGACCGAGTTGTAATTCAGGAGATGCTGAAGACAGTGGCCCA
GTCACAACAACTTGAAACCAGCTCACAAAGAGACTTCAAAGTGGTATTATTGACAGAGGTGGACAAACTC
ACAAAGGATGCTCAGCATGCCTTACGCAGAACTATGGAGAAATACATGTCTACCTGCAGGCTCATCTTGT
GCTGCAATTCCACATCCAAGGTGATACCCCCGATCCGAAGCAGGTGCCTGGCAGTTCGTGTGCCTGCTCC
CAGCATCGAAGATATTTGCAGTGTACTATCCACTGTCTGCAGGAAGGAAGGTCTGGCTCTCCCTTCGACA
TTGGCCCGTAGGCTGGCCGAGAAGTCATGCCGAAACCTCAGGAAAGCCTTACTTATGTGTGAGGCCTGCA
GAGTGCAGCAATACCCTTTTACGGAAGACCAAGAAATCCCAGAGACAGACTGGGAGGTGTATCTGAGGGA
GACCGCAAATGCTATTGTCAGTCAGCAGACGCCACAGAGGCTCCTTGAAGTCCGTGGAAGGCTCTATGAG
CTTCTAACTCATTGTATTCCTCCTGAGATTATAATGAAGGGCCTCCTCTCAGAACTCCTCCATAACTGTG
ATGGGCAGCTGAAAGGGGAAGTGGCACAGATGGCAGCCTACTATGAGCACCGACTACAGCTGGGCAGCAA
AGCCATTTATCATTTGGAAGCATTTGTGGCGAAGTTTATGGCACTTTATAAGAAGTTCATGGAGGATGGA
CTGGAAGGCATGATGTTCTGA

Translation (356 aa):
MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIGVEKLRIE
HQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKL
TKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPST
LARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYE
LLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDG
LEGMMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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