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Report for CCDS17286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17286.1 Public Mus musculus 3 Sec62 23 108 98 CCDS HistoryNCBI Gene:69276Re-query CCDS DB by CCDS ID:17286.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029256.8 ENSMUSP00000029256.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029256.8Link to Ensembl Protein Viewer:ENSMUSP00000029256.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029256Re-query CCDS DB by Protein ID:ENSMUSP00000029256
Original member Current member NCBI NM_027016.2 NP_081292.1 Accepted alive Link to Nucleotide Sequence:NM_027016.2Link to Protein Sequence:NP_081292.1Re-query CCDS DB by Nucleotide ID:NM_027016Re-query CCDS DB by Protein ID:NP_081292Link to BLAST:NP_081292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081292.1 398 Q8BU14 398 100% 0 0

Chromosomal Locations for CCDS 17286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30793348 30793383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30800131 30800239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30801060 30801165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30809822 30810026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30810445 30810537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30812296 30812356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30814234 30814353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30818500 30818966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGCGGAACGCAGGCGACACAAGAAGCGGATCCAGGAAGTTGGTGAACCATCTAAAGAAGAGAAGGCTG
TAGCCAAATATCTTCGATTCAACTGTCCAACAAAATCCACCAACATGATGGGTCATCGGGTTGACTATTT
TATTGCTTCAAAAGCAGTGGAGTGCCTCTTGGATTCAAAGTGGGCCAAGGCCAAGAAAGGAGAGGACGCT
TTATTTACAACCAGGGAGTCTGTGGTCGACTACTGCAACAGGCTTTTAAAGAAACAGTTTTTCCATCGGG
CCCTAAAAGTAATGAAAATGAAATATGATAAAGACGTAAAAAAAGAAAAAGATAAAGGGAAATCAGAAAG
TGGGAAAGAAGATGATAAAAAGAGCAAGAAAGAAAGTGTTAAAGAAGAAAAAACAAAAAAGGAAAAAGAA
AAAAAGAAAGATGGTGAAAAGGAAGATTCCAAAAAGGAGGAAACTCCAGGAACTCCAAAAAAGAAGGAAA
CTAAGAAAAAATTCAAACTTGAGCCACATGATGATCAAGTTTTTCTGGATGGAAATGAGGTTTTTGTGTG
GATCTATGACCCAGTTCACATTAAAACATTTGTCATGGGATTAATTCTTGTGATTGCAGTAATAGCAGCC
ACCCTCTTCCCTCTCTGGCCAGCAGAAATGAGAGTAGGTGTTTATTACCTCAGTGTGGGCGCAGGCTGTT
TTGTAGCCAGCATTCTTCTCCTTGCTATTGCTCGCTGCATCCTGTTTCTCATCATCTGGCTGATAACTGG
AGGAAGGCACCACTTTTGGTTCCTGCCAAACCTGACTGCTGACGTGGGCTTCATTGACTCCTTCAGGCCC
CTGTACACACATGAGTACAAAGGACCAAAAGCAGACTTAAAGAAGGATGAGAAATCTGAAACCAAAAAGC
AGCAGAAGTCCGACAGTGAGGAAAAGTCAGACAGTGAGAAAAAGGAGGATGAGGAAGGGAAAGGAGCTCC
GGCAGACCATGGACCAGAAGGCTCGGGCGGAGAGCGGCACTCAGACACGGACAGTGACAGGCGGGAAGAC
GACCGCTCGCAACACAGTAGCGGGAACGGGAATGATTTTGAAATGATCACGAAGGAGGAGCTGGAGCAGC
AGACAGATGGGGATTGTGATGAGGAGGATGACGACAAAGATGGAGAGGTGCCTAAATCTGCACATGAGAA
ATCATAA

Translation (398 aa):
MAERRRHKKRIQEVGEPSKEEKAVAKYLRFNCPTKSTNMMGHRVDYFIASKAVECLLDSKWAKAKKGEDA
LFTTRESVVDYCNRLLKKQFFHRALKVMKMKYDKDVKKEKDKGKSESGKEDDKKSKKESVKEEKTKKEKE
KKKDGEKEDSKKEETPGTPKKKETKKKFKLEPHDDQVFLDGNEVFVWIYDPVHIKTFVMGLILVIAVIAA
TLFPLWPAEMRVGVYYLSVGAGCFVASILLLAIARCILFLIIWLITGGRHHFWFLPNLTADVGFIDSFRP
LYTHEYKGPKADLKKDEKSETKKQQKSDSEEKSDSEKKEDEEGKGAPADHGPEGSGGERHSDTDSDRRED
DRSQHSSGNGNDFEMITKEELEQQTDGDCDEEDDDKDGEVPKSAHEKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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