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Report for CCDS88711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88711.1 Public Mus musculus 14 Gfra2 23 108 98 CCDS HistoryNCBI Gene:14586Re-query CCDS DB by CCDS ID:88711.1Re-query CCDS DB by GeneID:14586See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227697.1 ENSMUSP00000154391.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227697.1Link to Ensembl Protein Viewer:ENSMUSP00000154391.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227697Re-query CCDS DB by Protein ID:ENSMUSP00000154391
Original member Current member NCBI NM_001302095.1 NP_001289024.1 Accepted alive Link to Nucleotide Sequence:NM_001302095.1Link to Protein Sequence:NP_001289024.1Re-query CCDS DB by Nucleotide ID:NM_001302095Re-query CCDS DB by Protein ID:NP_001289024Link to BLAST:NP_001289024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289024.1 331 O08842-2 331 100% 0 0

Chromosomal Locations for CCDS 88711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70890855 70890894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70925718 70926072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70966207 70966316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70966997 70967137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70968244 70968416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70977256 70977309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70978374 70978496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGATCTTGGCAAACGCCTTCTGCCTCTTCTTCTTTTTAGGGACAGGGGCAGACCCGGTGGTCAGTGCCA
AGAGCAACCACTGCCTGGATGCCGCCAAGGCCTGCAACCTGAACGACAACTGCAAGAAGCTCCGCTCCTC
CTACATCTCCATCTGCAACCGCGAGATCTCTCCCACCGAACGCTGCAACCGCCGCAAGTGCCACAAGGCC
CTGCGCCAGTTCTTCGACCGTGTGCCCAGCGAGTATACCTACCGCATGCTCTTCTGCTCCTGTCAGGACC
AGGCATGCGCCGAGCGTCGCCGGCAAACCATCCTGCCCAGCTGTTCCTATGAGGACAAAGAGAAGCCCAA
TTGCTTGGACCTGCGCAGCCTGTGTCGTACAGACCACTTGTGCCGGTCCCGCCTGGCAGACTTCCACGCC
AACTGTCGAGCCTCCTACCGGACAATCACCAGCTGCCCTGCGGACAACTACCAGGCATGTCTGGGCTCCT
ATGCTGGCATGATTGGGTTTGATATGACACCGAACTATGTGGACTCCAACCCCACGGGCATCGTGGTGTC
TCCCTGGTGCAATTGTCGTGGCAGTGGGAACATGGAAGAAGAGTGTGAGAAGTTCCTCAAGGACTTCACA
GAAAACCCATGCCTCCGGAATGCCATTCAAGCCTTTGGCAATGGCACAGATGTGAACATGTCTCCCAAAG
GCCCCACATTTTCAGCTACCCAGGCCCCTCGGGTAGAGAAAACTCCTTCACTGCCAGATGACCTCAGTGA
TAGCACCAGCCTGGGGACCAGTGTCATCACCACCTGCACATCTATCCAGGAGCAAGGGCTGAAGGCCAAC
AACTCCAAAGAGTTAAGCATGTGTTTCACAGAGCTCACGACAAATATCAGCCCAGGGAGTAAAAAGGTGA
TCAAACTTTACTCAGGCTCCTGCAGAGCCAGACTGTCGACTGCCTTGACTGCCCTCCCACTCCTGATGGT
GACCTTGGCCCAGTAG

Translation (331 aa):
MILANAFCLFFFLGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKA
LRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRSLCRTDHLCRSRLADFHA
NCRASYRTITSCPADNYQACLGSYAGMIGFDMTPNYVDSNPTGIVVSPWCNCRGSGNMEEECEKFLKDFT
ENPCLRNAIQAFGNGTDVNMSPKGPTFSATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSIQEQGLKAN
NSKELSMCFTELTTNISPGSKKVIKLYSGSCRARLSTALTALPLLMVTLAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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