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Report for CCDS16593.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16593.1 Public Mus musculus 2 Dnajc17 23 108 98 CCDS HistoryNCBI Gene:69408Re-query CCDS DB by CCDS ID:16593.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16593.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038439.3 ENSMUSP00000041841.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038439.3Link to Ensembl Protein Viewer:ENSMUSP00000041841.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038439Re-query CCDS DB by Protein ID:ENSMUSP00000041841
Original member Current member NCBI NM_139139.2 NP_631878.2 Accepted alive Link to Nucleotide Sequence:NM_139139.2Link to Protein Sequence:NP_631878.2Re-query CCDS DB by Nucleotide ID:NM_139139Re-query CCDS DB by Protein ID:NP_631878Link to BLAST:NP_631878.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631878.2 303 Q91WT4 303 100% 0 0

Chromosomal Locations for CCDS 16593.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119172566 119172685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119179352 119179462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119179885 119179965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119180487 119180564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119180926 119180969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119183599 119183695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119183917 119184002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119185696 119185783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119186029 119186087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119186346 119186415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119208688 119208765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCGGTGACCAAAGAGCTCTTACAAATGGATCTGTACGCGCTGCTCGGCATTGAGGAGAAGGCGGCAG
ACAAAGAGGTGAAGAAGGCGTACAGGCAAAAAGCACTATCCTGCCACCCAGACAAAAATCCAGATAACCC
CAGAGCAGCTGAACTCTTCCACCAGCTGTCCCAGGCCTTGGAAGTGCTGACGGATGCTGCAGCCAGGGCT
GCATATGACAAGGTTAGGAAAGCCAAGAAGCAGGCAGCAGAGAGGACCCAGAGACTTGACGAGAACAGGA
AGAAAGTGAAACTTGATCTGGAGGCCAGGGAGCGGCAGGCCCAGGCCCATGGGAGTGAGGAAGAGGAGGA
GAGCAGGAGCGCCACCACACTAGAGCAGGAGATTGCTCGACTTCGAGAAGAGGGTTCCCGTCAGTTGGAA
GAGCAGCAGAGGCTGATCCAGGAGCAGATCCGCCAGGACCGAGAACAGAGGCTGAGAGGAAGAACAGAAA
ATACTGAAGGCAAAGGAACCCCCAAACTAAAGCTAAAGTGGAAGTGCAAGAAGGAGGATGAGTCCCAAGG
TGGCTACTCCAGAGATGTCCTCCTGAGGCTTTTACAGAAGTATGGGGAGGTTCTCAACCTGGTACTTTCC
AGAAAGAAGGCAGGCAATGCCATAGTGGAGTTTGCAACTGTCAGAGCTGCGGAGCTGGCTGTCAGAAATG
AAGTGGGCCTGGCTGACAACCCTCTGAAGGTTTCCTGGTTGGAGGGACAGCCCCAGAGCACAGTGGACCC
CGGCCCCCCAGGACTGTCAAAGGGCTCAGTGCTGTCAGAAAGGGACTTTGAGAGTCTCGTCATGATGCGC
ATGCGCCAGGCAGCTGAGCGCCAGCAGCTGATTGCCCAGATGCAGCAGGAAGATGAGGGGCGGCCCACGT
AG

Translation (303 aa):
MAVTKELLQMDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALEVLTDAAARA
AYDKVRKAKKQAAERTQRLDENRKKVKLDLEARERQAQAHGSEEEEESRSATTLEQEIARLREEGSRQLE
EQQRLIQEQIRQDREQRLRGRTENTEGKGTPKLKLKWKCKKEDESQGGYSRDVLLRLLQKYGEVLNLVLS
RKKAGNAIVEFATVRAAELAVRNEVGLADNPLKVSWLEGQPQSTVDPGPPGLSKGSVLSERDFESLVMMR
MRQAAERQQLIAQMQQEDEGRPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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