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Report for CCDS29238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29238.1 Public Mus musculus 18 Commd10 23 108 98 CCDS HistoryNCBI Gene:69456Re-query CCDS DB by CCDS ID:29238.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049388.8 ENSMUSP00000041650.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049388.8Link to Ensembl Protein Viewer:ENSMUSP00000041650.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049388Re-query CCDS DB by Protein ID:ENSMUSP00000041650
Original member NCBI NM_178377.4 NP_848464.1 Updated not alive Link to Nucleotide Sequence:NM_178377.4Link to Protein Sequence:NP_848464.1Re-query CCDS DB by Nucleotide ID:NM_178377Re-query CCDS DB by Protein ID:NP_848464
Current member NCBI NM_178377.5 NP_848464.1 Accepted alive Link to Nucleotide Sequence:NM_178377.5Link to Protein Sequence:NP_848464.1Re-query CCDS DB by Nucleotide ID:NM_178377Re-query CCDS DB by Protein ID:NP_848464Link to BLAST:NP_848464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848464.1 202 Q8JZY2 202 100% 0 0

Chromosomal Locations for CCDS 29238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46958888 46958928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46960416 46960506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46963660 46963770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46967740 46967895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46990479 46990589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47086252 47086311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 47087028 47087066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGCGGCGTCCGCAGCGCTGATCCTGCCCGAGAGCCCCAGCATGAAGAAAGCGGTGCCGCTGATAAATG
CAATAGACACGGGGAGATTCCCACGACTTCTCAGCCGGATTCTTCAAAAGCTCCACCTGAAGGCCGAGAG
CAGTTTCAGTGAAGAAGAGGAAGAAAAACTTCAGGCTGCATTCTCTCTAGAGAAACAAGAACTTCACCTG
GTTCTGGAGACAATATCATTTGTTTTGGAACAGGCAGTGTATCACAACGTGAAGCCAGCAGCACTGCAGC
AGCAACTAGAGATGATTCATCTTAGGAAAGACAAAGCGGAAGCCTTTGCCAGTGCTTGGTCGGCTATGGG
TCAGGAGACAGTTGAGAAGTTCCGCCAGAGAATCCTGGGCCCTCACAAGCTAGAGACAGTGGGATGGCAG
CTTAACCTGCAAATGGCCCACTCTGCTCAAGCAAAGCTGCAGTCTCCCCAGGCCGTGCTGCAACTGGGAG
TGAGCAAGGAAGACGCCAAGAACGTGGAGAAAGTTCTCGTGGAATTCAATCACAAGGAGCTGTTCGATTT
CTACAACAAGCTGGAGACCATACAAGCGCAGCTGGACTCCCTCACATGA

Translation (202 aa):
MAASAALILPESPSMKKAVPLINAIDTGRFPRLLSRILQKLHLKAESSFSEEEEEKLQAAFSLEKQELHL
VLETISFVLEQAVYHNVKPAALQQQLEMIHLRKDKAEAFASAWSAMGQETVEKFRQRILGPHKLETVGWQ
LNLQMAHSAQAKLQSPQAVLQLGVSKEDAKNVEKVLVEFNHKELFDFYNKLETIQAQLDSLT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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