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Report for CCDS37316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37316.1 Public Mus musculus 16 Iqcg 23 108 98 CCDS HistoryNCBI Gene:69707Re-query CCDS DB by CCDS ID:37316.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115100.8 ENSMUSP00000110752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115100.8Link to Ensembl Protein Viewer:ENSMUSP00000110752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115100Re-query CCDS DB by Protein ID:ENSMUSP00000110752
Original member Current member NCBI NM_178378.3 NP_848465.1 Accepted alive Link to Nucleotide Sequence:NM_178378.3Link to Protein Sequence:NP_848465.1Re-query CCDS DB by Nucleotide ID:NM_178378Re-query CCDS DB by Protein ID:NP_848465Link to BLAST:NP_848465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848465.1 419 Q80W32 419 100% 0 0

Chromosomal Locations for CCDS 37316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33016938 33017063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33019441 33019542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33020514 33020645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33029015 33029089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33030775 33030936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33035541 33035622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33040764 33040892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33045520 33045701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33049852 33050113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33053624 33053631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGACGAGGAAGAGGTGGAAGTCGTGGAGTCTCCTTCAGAGGTTTTACAACCTGAGGTCACTGTGGTGG
TGACAGGAGAGCCTCCTGAAGCTGCAGAAGAAGATCTAGATTACGAAGAAGAGGAAGAGACCTCCCCGGA
AGTCATAGAGACGCTGTCCCTTCTAGACGTGCTGAGGGTGTCGGCCGTCATGGAGGACGTCATTGACCAG
CTCTCTATTCTCGGCTACATCATTCCGGTTCAGTATGAAAGAAGGCAGAGCCTCACCCAGAAAGCCAGCC
ACGAAGGAGCATCTATGATTACAACCACACCGAAAAAATCTACTTCTTTGTTAACTAAAGAAAAATCCAT
GATGGCAGAAAACAAACAGAGAGGGCAGGACTTTACCTTTAAAAAACCTACAAAGCAGACCATGATGACT
CTGGAGACACTGAAGAAAATTCAGAATGACAGGCAATATTTCAGTGATGTAATTGCAAATGCCATGATGG
AGATGCAAGATTCTGGCTCTTTCACCAGTCTCCTGAAAGCCTTGGGCAAAGAAAGAGACAGCAAAATGAA
TTTCCATGATGTCATCACAAGGGAGGAAAAGGGAAGAAAACAGATAAAAACCCTTCAAAAACAGTTACTT
GATGTCAAAAGGGAGCGTCAAATGCAAGTACAGAACGGGAATGAATACATTGCTCACCTCAGGGACCAGC
TACAAGAGATGAAGGCGAAAACCAACTTGGAGAATCTTTATATGAAAAGAAATGCTGAGCTGCAGATTTC
CCAGACCCAGAAGAAATGTAACCGAGCAGAAGAACTCTTGCTGGAGGAGATTGAGAAACTGAGGATGAAA
ACTGAAGAGGAGAACCGGGTTCACACGGAGATCGAAATGTTTCTTAAAAAACAGCAGCAGAAACTTGAGG
AGAAGCTAGAGTTCTGGATGGAGAAATTTGACAAAGACACAGAAGCAAAGCAGAACGAGTTAAATGCTCT
CAAGGCTGCCAAGGCCAGTGACCTGGTACACCTGCAAGACCTGGCAAAGATGATCCGGGAGTACGAGCAG
GTCATTATTGAGGACCGGATAGAAAAGGAGAAGACCCGGAAGAAGCTGGAGCAGGATGACCTGGAGCTGA
GGAGCATCGTGAAGCTCCAGGCCTGGTGGCGAGGGTCAGTGGTCCGGAAGGAAATTGGCAATTTCAAAAT
GCCCAAGAAAGATAAAGATGACAGCAAAGACTCGAAAGGCAAGGAGAAGGAGAAGAGGAGAAAGAAGTAA

Translation (419 aa):
MDEEEVEVVESPSEVLQPEVTVVVTGEPPEAAEEDLDYEEEEETSPEVIETLSLLDVLRVSAVMEDVIDQ
LSILGYIIPVQYERRQSLTQKASHEGASMITTTPKKSTSLLTKEKSMMAENKQRGQDFTFKKPTKQTMMT
LETLKKIQNDRQYFSDVIANAMMEMQDSGSFTSLLKALGKERDSKMNFHDVITREEKGRKQIKTLQKQLL
DVKRERQMQVQNGNEYIAHLRDQLQEMKAKTNLENLYMKRNAELQISQTQKKCNRAEELLLEEIEKLRMK
TEEENRVHTEIEMFLKKQQQKLEEKLEFWMEKFDKDTEAKQNELNALKAAKASDLVHLQDLAKMIREYEQ
VIIEDRIEKEKTRKKLEQDDLELRSIVKLQAWWRGSVVRKEIGNFKMPKKDKDDSKDSKGKEKEKRRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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