NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79922.1 Public Mus musculus 3 Shox2 23 108 98 CCDS HistoryNCBI Gene:20429Re-query CCDS DB by CCDS ID:79922.1Re-query CCDS DB by GeneID:20429See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162439.7 ENSMUSP00000124924.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162439.7Link to Ensembl Protein Viewer:ENSMUSP00000124924.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000162439Re-query CCDS DB by Protein ID:ENSMUSP00000124924
Original member Current member EBI ENSMUST00000162060.8 ENSMUSP00000125031.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162060.8Link to Ensembl Protein Viewer:ENSMUSP00000125031.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000162060Re-query CCDS DB by Protein ID:ENSMUSP00000125031
Original member Current member NCBI NM_001302358.1 NP_001289287.1 Accepted alive Link to Nucleotide Sequence:NM_001302358.1Link to Protein Sequence:NP_001289287.1Re-query CCDS DB by Nucleotide ID:NM_001302358Re-query CCDS DB by Protein ID:NP_001289287Link to BLAST:NP_001289287.1
Original member Current member NCBI NM_001302359.1 NP_001289288.1 Accepted alive Link to Nucleotide Sequence:NM_001302359.1Link to Protein Sequence:NP_001289288.1Re-query CCDS DB by Nucleotide ID:NM_001302359Re-query CCDS DB by Protein ID:NP_001289288Link to BLAST:NP_001289288.1

Chromosomal Locations for CCDS 79922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66973650 66973907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66975444 66975532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66975853 66975910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66978186 66978353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGAGGACGAAGGCCAGACCAAAATCAAGCAGAGGCGAAGTCGGACCAATTTTACCCTGGAACAACTCA
ACGAGCTGGAGAGGCTTTTCGATGAGACCCACTATCCAGACGCTTTCATGCGCGAGGAATTGAGCCAGCG
ACTGGGGCTCTCTGAGGCCCGAGTACAGGTTTGGTTTCAAAATCGAAGAGCTAAGTGTAGAAAACAGGAA
AATCAACTTCACAAAGGTGTCCTTATAGGAGCCGCTAGCCAGTTTGAAGCTTGTAGAGTTGCACCCTATG
TCAACGTAGGTGCTTTAAGGATGCCATTTCAGCAGGTTCAGGCGCAGCTGCAGCTGGACAGCGCCGTGGC
GCACGCGCACCACCACCTGCATCCGCACCTGGCCGCGCACGCGCCTTACATGATGTTCCCGGCACCGCCC
TTCGGACTGCCGCTGGCCACGCTGGCCGCGGACTCGGCCTCGGCCGCCTCGGTGGTGGCCGCTGCCGCCG
CCGCCAAGACCACCAGCAAGAACTCCAGCATCGCGGATCTCAGACTGAAAGCTAAAAAGCACGCGGCCGC
CCTGGGTCTGTGA

Translation (190 aa):
MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQE
NQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPP
FGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH