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Report for CCDS23984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23984.1 Public Mus musculus 10 Gzmm 23 108 98 CCDS HistoryNCBI Gene:16904Re-query CCDS DB by CCDS ID:23984.1Re-query CCDS DB by GeneID:16904See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020549.3 ENSMUSP00000020549.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020549.3Link to Ensembl Protein Viewer:ENSMUSP00000020549.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020549Re-query CCDS DB by Protein ID:ENSMUSP00000020549
Original member Current member NCBI NM_008504.3 NP_032530.1 Accepted alive Link to Nucleotide Sequence:NM_008504.3Link to Protein Sequence:NP_032530.1Re-query CCDS DB by Nucleotide ID:NM_008504Re-query CCDS DB by Protein ID:NP_032530Link to BLAST:NP_032530.1

Chromosomal Locations for CCDS 23984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79689411 79689465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79692821 79692980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79694124 79694262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79694351 79694617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79694987 79695160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGAGGTCTGCTGGTCCCTGCTGCTACTGCTGGCCCTGAAAACACTGTGGGCAGCAGGCAACAGATTTG
AG
ACCCAGATCATTGGGGGTCGAGAGGCAGTCCCGCACTCCCGCCCATACATGGCCTCTCTACAGAAAGC
C
AAGTCCCATGTGTGTGGGGGAGTCCTTGTGCATCGGAAGTGGGTATTGACAGCTGCCCACTGCCTGTCT
GAG
CCGCTACAGAACCTGAAGCTGGTGCTTGGCCTGCACAACCTCCATGATCTCCAAGATCCTGGCCTCA
CC
TTCTACATCCGGGAAGCCATTAAACACCCTGGCTACAACCACAAATATGAGAACGACCTGGCACTGCT
T
AAGCTAGATAGACGAGTGCAGCCCAGCAAGAATGTCAAACCACTAGCTCTGCCAAGAAAGCCCCGATCC
AAG
CCGGCAGAAGGTACCTGGTGCAGCACAGCTGGCTGGGGAATGACCCACCAGGGTGGGCCCCGGGCCA
GG
GCCCTGCAGGAGTTGGATCTGCGTGTGCTGGATACCCAAATGTGTAACAACAGCCGCTTCTGGAACGG
T
GTCCTCATAGACAGCATGCTATGCTTAAAGGCTGGGAGCAAGAGCCAAGCCCCCTGCAAGGGTGACTCT
GGA
GGGCCCCTGGTGTGTGGCAAAGGCCAGGTGGATGGGATCCTGTCTTTCAGCTCCAAAACCTGCACAG
AC
ATCTTCAAGCCACCTGTGGCCACTGCTGTAGCCCCCTACAGCTCCTGGATCAGGAAGGTCATTGGTCG
C
TGGTCACCCCAATCTTTGGTCTGA


Translation (264 aa):
MEVCWSLLLLLALKTLWAAGNRFETQIIGGREAVPHSRPYMASLQKAKSHVCGGVLVHRKWVLTAAHCLS
E
PLQNLKLVLGLHNLHDLQDPGLTFYIREAIKHPGYNHKYENDLALLKLDRRVQPSKNVKPLALPRKPRS
K
PAEGTWCSTAGWGMTHQGGPRARALQELDLRVLDTQMCNNSRFWNGVLIDSMLCLKAGSKSQAPCK
GDS
G
GPLVCGKGQVDGILSFSSKTCTDIFKPPVATAVAPYSSWIRKVIGRWSPQSLV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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