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Report for CCDS20235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20235.1 Public Mus musculus 6 Ptcd3 23 108 98 CCDS HistoryNCBI Gene:69956Re-query CCDS DB by CCDS ID:20235.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082094.4 ENSMUSP00000080743.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082094.4Link to Ensembl Protein Viewer:ENSMUSP00000080743.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000082094Re-query CCDS DB by Protein ID:ENSMUSP00000080743
Original member Current member NCBI NM_027275.3 NP_081551.2 Accepted alive Link to Nucleotide Sequence:NM_027275.3Link to Protein Sequence:NP_081551.2Re-query CCDS DB by Nucleotide ID:NM_027275Re-query CCDS DB by Protein ID:NP_081551Link to BLAST:NP_081551.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081551.2 685 Q14C51 685 100% 0 0

Chromosomal Locations for CCDS 20235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71881153 71881231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71881506 71881664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71882188 71882229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71883444 71883592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71884540 71884625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71885309 71885399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71885498 71885576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71888557 71888663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71889341 71889369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71889594 71889686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71892469 71892519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71893382 71893526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71894287 71894372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71894821 71894881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71895905 71895992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71897113 71897168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71898340 71898455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71901196 71901319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71902856 71902960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71903426 71903494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71905098 71905143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71907653 71907689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71907794 71907846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71908634 71908740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGCGGCGGCGGCGGTTGCAGCTCGCCGCCTGTCCTTTCGCAGCGGGCTTGTCTTGCTGCAGACCACTC
GGGGGACGGGTGTGTGTGAACCGAAGGTCTGTTGCAGATTTTATGCTGGAACTGAATCCCTCCCAAAGGT
TGAAGGATCAGATATAACAGGGATTGAAGAAATAGTCATTCCAAAAAAGAAAACATGGGATAAAGTGGCT
GTTCTTCAGGCACTTGCATCCACAGTAAACAGGGATCCTACAGCTGCACCTTATGTATTTCACGATGATC
CTTACCTCATACCAACCTCTGCTCTGGAGTCTCGTTCATTTTTATTGGCAAAGAAGTCTGGAGAGACTGC
AGCAAAGTTTATTATTAATTCATATCCCAAATATTTCCAAAAGGATATAGCTGAGCCTCATATACCGTGC
TTAATGCCTGAGTACTTTGAGCCTCAGATTGAAGATGTAAGCGAAGCTGCCCTGGAGGAGCGAATCAGAC
TCAGAAAAGTCAGAGCTTCTGTGGACATGTTTGACCAGCTCTTGCAAGCAGGAACCACAGTCTCTCTTGA
AACAACTAATAGTCTTTTGGATTTATTGTGTTACTATGGTGACCAAGAGCCCCCAGCTGACTATCCTTTT
CAACAAACTGAACATTTGGAAAACTTGGAAGAAGCTGCAGAGGAAAATAATCAAACATCCAAGATGGAGT
CTGGTCCTTGGAAAGCACAAAACAATGCTGAGAGGATCTTCGCTTTAATGCCAGAGAAGAATGCACGCTC
CTACTGCACGATGATCCGAGGGATGGTGAAGCACCGAGCTTATGCACAGGCACTGAACGTGTACACAGAG
TTATTAAATAACAGACTTAGTGCTGATGTATATACCTTTAATGCATTGATTGAAGCAAAAACATTCATAC
TCAATGAGAAATTTGAGGAAAAATGGAATGATATACTGGATCTACTGAAACATATGGTTGCACAGAAAGT
GAAACCAAATCTGCAGACTTTTAATACAATATTGAAAGGTCTCCGGAAGTGTTACTCACTTGGAAGGATA
CCAGCCTTACAGATACTACGTGAAATGAAACATATTGGAATAGAACCCTCACTTGCAACATACCATCATA
TTATTCACCTCTTTTATCCAAGAGATTTAAGCGCTATAAAAATGCCATCCCTCATCATCTATGATATCAT
GAATGAATTAGAGGGAAGAACATTTTCTCCACAGGACCTTGATGATGGTAGATTTTTTCAGTTGGCCATG
AGTGTGTGTTCATCTCTCAGAGATTTAGAGCTTGCTTACCAAGTACACAGACTTTTAAACACGGGGGACA
ACCGGAAACTGGTCGGACATGATCCTCTACGTAAGGTATATTATTCGAAGTTTTTCAGTTTGATTTGTTC
ACTGGAACAAATTGATGTCACCTTGAAGTGGTATAAGGACCTAATACCTTCAGTGTTCCTTCCCCACTAC
CAAATATTCATAGGTCTTCTTCAAGCATTGGATGTGGCCAATAGACTAGAATTGGTTCCTCAGATTTGGA
AAGATAGTAAAGAATACAGTCATACTTTCCGAGATGCCCTAAGAGAAGAAGTATTGATGCTCATGGCCAG
GGATAAACATCCACCAGAGCTTCAGGTTGCATTTGCTGACTGTGCTGCTGATATCAAATCCACATACGAA
GACCAGAGTGCCCGGCAGCCTGCTTTTGATTGGCCAGCCAACCCTTTACAGTATATAGCTGTCCTTTTTT
TAAGAGGTGGCAGAAGCCAGGAAGCCTGGAAAATGTTGGAACTCTTCAAAAAGCACAAGAAGATTCCCAG
AAATGAATTGCTGGAGGAATTCATGGACACAGCGAAAGCATCCGGTAGCACTGCTCTGGCCATTGAGGTT
GTAAAGCTGGCAAGTGCCTTCAGCTTGCCTATTGGGGAGAGCCTTGCCCAAAGAGTAGTGATGGATTTCA
CAGTTGACCCAGAACAAAAAGAAGCCCTGGGTAACCTCACTGAACTGAACAGTAGCGATGGAGAAAGCAG
CAGTGACAGTGACAGTGACGACAAATGA

Translation (685 aa):
MAAAAVAARRLSFRSGLVLLQTTRGTGVCEPKVCCRFYAGTESLPKVEGSDITGIEEIVIPKKKTWDKVA
VLQALASTVNRDPTAAPYVFHDDPYLIPTSALESRSFLLAKKSGETAAKFIINSYPKYFQKDIAEPHIPC
LMPEYFEPQIEDVSEAALEERIRLRKVRASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPPADYPF
QQTEHLENLEEAAEENNQTSKMESGPWKAQNNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNVYTE
LLNNRLSADVYTFNALIEAKTFILNEKFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLRKCYSLGRI
PALQILREMKHIGIEPSLATYHHIIHLFYPRDLSAIKMPSLIIYDIMNELEGRTFSPQDLDDGRFFQLAM
SVCSSLRDLELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSLICSLEQIDVTLKWYKDLIPSVFLPHY
QIFIGLLQALDVANRLELVPQIWKDSKEYSHTFRDALREEVLMLMARDKHPPELQVAFADCAADIKSTYE
DQSARQPAFDWPANPLQYIAVLFLRGGRSQEAWKMLELFKKHKKIPRNELLEEFMDTAKASGSTALAIEV
VKLASAFSLPIGESLAQRVVMDFTVDPEQKEALGNLTELNSSDGESSSDSDSDDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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