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Report for CCDS85893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85893.1 Public Mus musculus Y Ssty2 23 108 98 CCDS HistoryNCBI Gene:70009Re-query CCDS DB by CCDS ID:85893.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179136.1 ENSMUSP00000137417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179136.1Link to Ensembl Protein Viewer:ENSMUSP00000137417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179136Re-query CCDS DB by Protein ID:ENSMUSP00000137417
Original member Current member EBI ENSMUST00000190565.1 ENSMUSP00000139505.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190565.1Link to Ensembl Protein Viewer:ENSMUSP00000139505.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190565Re-query CCDS DB by Protein ID:ENSMUSP00000139505
Original member Current member NCBI NM_023546.3 NP_076035.3 Accepted alive Link to Nucleotide Sequence:NM_023546.3Link to Protein Sequence:NP_076035.3Re-query CCDS DB by Nucleotide ID:NM_023546Re-query CCDS DB by Protein ID:NP_076035Link to BLAST:NP_076035.3

Chromosomal Locations for CCDS 85893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 67045883 67046566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGACATCACTCAAGAAGAAGAGTAGGAGGAAGCATTCTTCCCAGGCCCTGGGGAATATTGTTGGCTGCA
GAATTTCTCACGGGTGGAAGGAAGGTAATGAGCCTGTCACCCATTGGAAGGCCATCATTCTAGGTCAACT
GCCAACAAACCCTTCTCTTTATTTGGTGAAGTATGACGGAATTGACAGTGTCTACGGACAGGAGCTCCAC
AGCGATGAGAGGATTTTAAATCTTAAGGTCTTGCCTCACAAAGTAGATTTTCCTCAGGTGAGGGAGGTCC
ACCTCGCAGGCGCACTGGTTGGCAGAGAGGTACAACACAAATTTGAGGGGAAAGATGGCTCTGAGGACAA
CTGGAGTGGGATGGTGCTAGCCCAGGTGCCATTCTTACAGGACTATTTTTACATTTCCTACAAGAAGGAT
CCGGTCCTCTACGTCTATCAGCTCCTGGATGACTACAAGGAAGGTAACCTCCACATCATTCCAGAGACCC
CTCTGGCTGGGGTGAGATCAGGTGATGACAATGACTTCTTAATAGGTTCCTGGGTGCAGTACACCAGAGA
TGATGGATCCAAAAAGTTCGGAAAGGTTGTTTACAAAGTTCTAGCCAATCCTACTGTGTACTTTATCAAA
TTTCTCGGTGACCTCCATATCTATGTCTATACTCTGGTGTCAAATATCACTTAA

Translation (227 aa):
MTSLKKKSRRKHSSQALGNIVGCRISHGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELH
SDERILNLKVLPHKVDFPQVREVHLAGALVGREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKD
PVLYVYQLLDDYKEGNLHIIPETPLAGVRSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANPTVYFIK
FLGDLHIYVYTLVSNIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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