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Report for CCDS35995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35995.1 Public Mus musculus 10 Cactin 23 108 98 CCDS HistoryNCBI Gene:70312Re-query CCDS DB by CCDS ID:35995.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050867.7 ENSMUSP00000059533.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050867.7Link to Ensembl Protein Viewer:ENSMUSP00000059533.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050867Re-query CCDS DB by Protein ID:ENSMUSP00000059533
Original member Current member NCBI NM_027381.2 NP_081657.1 Accepted alive Link to Nucleotide Sequence:NM_027381.2Link to Protein Sequence:NP_081657.1Re-query CCDS DB by Nucleotide ID:NM_027381Re-query CCDS DB by Protein ID:NP_081657Link to BLAST:NP_081657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081657.1 772 Q9CS00 772 100% 0 0

Chromosomal Locations for CCDS 35995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81321211 81321446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81322438 81323005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81323121 81323266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81323619 81323781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81323910 81324024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81324303 81324495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81324869 81324988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81325090 81325376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81325464 81325954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGCGCGGCGCGGGCCGCCAAATGGGTCGGGACTCTCGCTCGCGCTCACGGTCTGTGGGTCGCAGGGGTC
GGAAGCAGCGGAGTCGAAGCCGGGGCCGGAGCCGCAGCCGGAGTCGGAGTCGGAGTCGGAGTCGGAGTCG
GAGCCGGAGCCGGAGCCGGAGCCATGGGCGGAGCAGCCGAAGGCGACGGGAACACGAGCGGCGGCGCGAA
CGCAAGCGGCGCAGCCGAGGGCGCAGGTCAGATTCGGAAGGAGAGCAGCGGCAGAAGTCTAGGAGGCGAA
GCCAGAGCCTTCGACCACCCCGATGGCACTCACAGAACCAGTCCTCATGCTCTGACTCGGGTGAGGAGCG
GGCTCAGGGCTCCTGGGCCCGTAAGGGTCACAGGCGCTCGTGGTCCCCGGGGTCATCAGCGTCTAGCTTG
GACTCCCCAAGACGCTCCCGGAGTCCCGGGACAGCTACCCTGGCCCTGAGCCAGCAGCAGAGCCTGCAGG
AACGGCTGCGGCTTCGTGAGGAGCGGAAGCAGCAAGAAGAGCTGCTCAAGGCCTTCGAGACGCCTGAGGA
GAAGCGTGCGCGGCGACTGGCCAAGAAGGAAGCTAAGGAACGCAAGAAGCGGGAGAAGATGGGCTGGGGT
GAGGAGTACATGGGCTACACCAACACCGACAACCCCTTTGGAGACAACAACCTGCTCGGCACCTTCATCT
GGAACAAGGCCTTGGAGAAGAAGGGCATCAGCCACCTGGAGGAGAAGGAGCTGAAGGAGCGCAACAAGAG
GATCCAGGAAGACAACCGTCTGGAGCTGCAAAAGGTCAAACAGCTGCGGCTAGAGCGGGAACGGGAGAAA
GCCATGAGGGAGCAGGAGCTGGAGTTGCTGCAGCGGGAGAAGGAGGCAGAACACTTTAAGACGTGGGAGG
AGCAAGAGGACAGCTTCCACTTGCGGCAGGCCAAGCTTCGCTCCAAGATCCGAATCCGAGATGGGCGAGC
TAAGCCCATCGACCTCCTGGCCAAGTACATCAGCGCAGAGGATGACGACCTGGCGGTGGAGATGCACGAG
CCCTACACCTTCCTCAACGGCCTCACTGTGGCGGACATGGAGGACCTACTAGAAGACATCCAGGTGTACA
TGGAACTAGAGCAGGGCAAGAATGTGGACTTCTGGCGGGACATGACGACCATCACAGAGGATGAGATTGC
CAAGCTCCGCAAGCTGGAGGCCTCTGGCAAGGGCCCAGGTGAGCGCCGTGAGGGAGTCAATGCCTCAGTC
AGCTCCGATGTGCAGTCGGTGTTCAAGGGAAAGACGTACAACCAGCTGCAGGTCATCTTCCAGGGCATCG
AGGGCAAGATCCGGGCCGGGGGCCCCAACCTGGACATGGGCTATTGGGAGAGCCTGCTGCAGCAGTTGCG
TGCACACATGGCCAGGGCCAGGCTCCGTGAGCGCCACCAAGATGTTCTTAGACAGAAGCTGTTCAAGCTG
AAGCAGGAGCAGGGTGTGGAGAGCGAGCCGCTGTTCCCCATCCTCAAGTCGGAGCCCTCGGCCGCCCACA
GCCCCGAACCTGAGGAGCGACCCCCCAGCCCCGGGACTTCAGTGGACCCAGTGGAGCCTGTGGAACCTGA
GGAGGCCACAGCACCAGGAGAAGCAGAGGGGGAGGCAGAAGGGGAGGCAGTGCTGATGGAGGAAGACCTG
ATCCAGCAGAGCCTGGCGGACTATGACGCCGGCCGCTACAGCCCACGGCTGCTCACGGCACACGAGCTGC
CTCTGGACGCACACGTGCTGGAGCCTCACGAGGACCTGCAGCGCCTGCAGCTGTCTCGCCAGCAGCTTCA
GGCTACAGGTGATGCGAGTGAGAGCGCTGAGGACATCTTCTTCCGGCGTGCGAGGGAGGGCATGGGGCAG
GATGAGGCACAGTTCAGCGTGGAGATGCCACTGGGCGGCCGGGCCTATCTGTGGGCCGACAAGTACCGGC
CGCGAAAACCTCGCTTCTTCAACCGCGTGCACACGGGCTTCGAGTGGAACAAATATAACCAGACGCATTA
TGACTTCGACAACCCTCCACCCAAGATTGTGCAGGGCTACAAATTCAACATCTTCTACCCAGACCTCATC
CGTAAGCGCGCCACACCTGAGTACTTCCTGGAGGCTTGTGCAGACAACCGGGACTTTGCCATTCTGCGCT
TCCATGCGGGACCGCCCTACGAGGACATCGCCTTCAAGATCGTCAGTCGTGAGTGGGAGTATTCGCACCG
CCATGGCTTCCGCTGCCAGTTCGCCAATGGAATCTTCCAGCTCTGGTTCCACTTCAAGCGCTACCGCTAC
CGTCGGTGA

Translation (772 aa):
MRGAGRQMGRDSRSRSRSVGRRGRKQRSRSRGRSRSRSRSRSRSRSRSRSRSRSHGRSSRRRREHERRRE
RKRRSRGRRSDSEGEQRQKSRRRSQSLRPPRWHSQNQSSCSDSGEERAQGSWARKGHRRSWSPGSSASSL
DSPRRSRSPGTATLALSQQQSLQERLRLREERKQQEELLKAFETPEEKRARRLAKKEAKERKKREKMGWG
EEYMGYTNTDNPFGDNNLLGTFIWNKALEKKGISHLEEKELKERNKRIQEDNRLELQKVKQLRLEREREK
AMREQELELLQREKEAEHFKTWEEQEDSFHLRQAKLRSKIRIRDGRAKPIDLLAKYISAEDDDLAVEMHE
PYTFLNGLTVADMEDLLEDIQVYMELEQGKNVDFWRDMTTITEDEIAKLRKLEASGKGPGERREGVNASV
SSDVQSVFKGKTYNQLQVIFQGIEGKIRAGGPNLDMGYWESLLQQLRAHMARARLRERHQDVLRQKLFKL
KQEQGVESEPLFPILKSEPSAAHSPEPEERPPSPGTSVDPVEPVEPEEATAPGEAEGEAEGEAVLMEEDL
IQQSLADYDAGRYSPRLLTAHELPLDAHVLEPHEDLQRLQLSRQQLQATGDASESAEDIFFRRAREGMGQ
DEAQFSVEMPLGGRAYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLI
RKRATPEYFLEACADNRDFAILRFHAGPPYEDIAFKIVSREWEYSHRHGFRCQFANGIFQLWFHFKRYRY
RR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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