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Report for CCDS39377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39377.1 Public Mus musculus 5 Tecpr1 23 108 98 CCDS HistoryNCBI Gene:70381Re-query CCDS DB by CCDS ID:39377.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085701.6 ENSMUSP00000082844.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085701.6Link to Ensembl Protein Viewer:ENSMUSP00000082844.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000085701Re-query CCDS DB by Protein ID:ENSMUSP00000082844
Original member Current member NCBI NM_027410.2 NP_081686.1 Accepted alive Link to Nucleotide Sequence:NM_027410.2Link to Protein Sequence:NP_081686.1Re-query CCDS DB by Nucleotide ID:NM_027410Re-query CCDS DB by Protein ID:NP_081686Link to BLAST:NP_081686.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081686.1 1166 Q80VP0-1 1166 100% 0 0

Chromosomal Locations for CCDS 39377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144195916 144196017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144196132 144196251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144196352 144196458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144197892 144197984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144198555 144198690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144199129 144199309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144199730 144199786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144200815 144200894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144201012 144201108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144203408 144203510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144204625 144204752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144206165 144206322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144206417 144206566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144207394 144207549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144208595 144208740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144209860 144210365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144211405 144211550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144212573 144212674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144214056 144214156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144214245 144214419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144216253 144216378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144216903 144217025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144217226 144217408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144218514 144218738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3501 nt):
ATGCCCACCTCCGTGCTGTGGGCGGTGGACCTCTTTGGGAGAGTGTATACCCTGTCCACGGCCGGTCAGT
ACTGGGAGCTTTGCAAGGATGTCCAATTGGAGTTCAAGAGGGTCAGTGCGGCCACCCAGTGCTGCTGGGG
CATCGCCGGCGACAACCAGGTCTACTTGTATGTGTGCTCCAGTGATGTACCCATCCGCCATCGAGAGGAG
GCCTATGAGAATCAGCGTTGGAACCCCATGGGAGGCTTCTGTGAGAAGCTCCTGCCGAGCGACCGCTGGC
CATGGAGTGACGTGAGTGGGCTCCAGCATCGGCCGCTGGATGGGGTAGCACTGCCTTCGCCACACTGGGA
ATGGGAGTCAGACTGGTACGTGGATGAGAATTTTGGAGGGGAGCCCACCGAGAAAGGGGGGTGGACATAC
GCTATGGACTTTCCTGCCACCTACACTAGAGACAAGAAATGGAATTCATGTGTGCGAAGGAGGAAATGGA
TCCGGTATAGGCGATACAAATCCCGGGACTCCTGGGCCAAGATCCCCTCAAAGGATGACCCCAAGGAACT
CCCTGATCCCTTCAATGACCTGTCTGTTGGGGGGTGGGAGATCACAGAGGAACCAGTCGGCCGCCTGTCA
GTGTGGGCTGTATCCCTGCAGGGAAAGGTGTGGTACCGAGAGGATGTCAGCCACCCCAACCCAGAAGGCT
CCTCCTGGTCTCTCGTGGAAACCCCAGGGGAGGTGGTCCAGATCAGCTGTGGGCCCCACGACCTTATATG
GGCCACCCTCTGGGAGGGACAGGCTCTGGTCAGAGAAGGAGTCTGCAGGAACAACCCAAAAGGAAGTTAC
TGGTCCATGGTGGAGCCTCCTGGATCTGAAAACGGTATCATGCACGTCTCCGCGGGCGTCAGTGTGGTCT
GGGCCATCACGAAGGACCGCAAAGTGTGGTTCCGGAGGGGTGTCAACTCTCACAACCCCTGTGGCACCAG
CTGGATCGAGATGGTCGGAGAGATGACCATGGTGAACGTGGGGCTGAATGACCAGGTCTGGGGTATCAGC
TGTGAGGACCGAGCCGTATACTTCCGGCAGGGTGTGACTCCCAGCGAGCTCAGCGGGAAGACATGGAAGG
CCATTGTCGTGGGCCGAGAAAGTGACCGGTCACACTCTGGCAGCTCGTCCAGTCTCCTCAGTGCTGGCTG
CTTCTTCGGCGACGAGGTGAGGGGCAGTGGTACAGAGTCGGCACCCAGTGATACCGATGCCTCCTTGGAA
GTTGAGAGACAGGGCCCCGAACAGCCTCTCCCCAAAGAAGCTTTGGACAATTCCACAAACCTTAAAGGGA
GCTTGTCCAAGGGCCACGAGACCAGCGGGAACACTGATCACTCCACGGAGAACGCCTGCCTGACTGAAGG
CAAAGAAAAGGCTCCTGAGACCTCTCGTTCTGATGAATGCCGCGGCCCTGCCTCCACGCCAGCTGAGCTG
CCCTGGACCAACATTGACCTAAAGGAGCCCAAGAAGGTGTCTAACCAGCCAGCTGCTGGCTTTCCCGAGA
CGGCGGGCCTCTCCTCCCTGGGGCTCTTCCCGATGGGCATGGAGGAGCCGTACGGGGCAGATGATCATCC
TCTGTGGGCCTGGGTGTCTGGAGGCGCATGTGCAGTGGAGGCGGGCTCTACACTTAAGTGGTTCACCATC
CAGTCAGGCCTGTCCCCTTCAGTGCAGACGCTGTCCCTGTCCATCACCCCTGCCCAGACGGCTGCCTGGA
GGAAGCAGATCTTCCAGCAACTCACAGAAAGGACCAAGCGGGAGCTGGAGAGCTTCAGGCACTACGAGCA
GGCCGTGGAGCAGTCAGTGTGGGTGAAGACGGGGGCCCTGCAGTGGTGGTGTGACTGGAAGCCCCACAAG
TGGGTGGACGTCCGTGTGGCCCTGGAGCAGTTCACAGGGCACGACGGGGCTCGAGACAGCATCCTCTTCA
TCTATTATGTGGTCCATGAGGAGAAGAAGTACCTACACGTGTTCCTGAATGAGGTGACCGTGCTGGTCCC
TGTGCTTAATGAGGCCAAGCACTCCTTTGCCCTCTACACCCCCGAGAGGACGAGACAGAGGTGGCCCGTA
CGCCTGGCTGCCGCCACAGAGCAAGACATGAATGACTGGCTCGCCCTGCTTAGCCTGTCCTGCTGCGAGA
GCCGGAAGGTCCATGGACGCCCATCCCCGCAGGCCATCTGGTCTGTCACTTGCAAGGGTGACATCTTTGT
GAGCGAGCCCAGCCCAGACCTGGAAGCCCGTGAGCGCCTGCTGCCCTGCGACCAGATGTTCTGGCGACAG
ATGGGAGGCCACTTGCGGATCATAGAGGCCAACAGCCGAGGCGTGGTATGGGGCATTGGCTATGATCACA
CGGCCTGGGTGTACACGGGCGGCTATGGCGGCGGTTGCTTCCAAGGCCTGGCCAGTAGCACCAGCAACAT
TTACACACAGTCAGATGTGAAGAGTGTCTACATCTATGAGAACCAGCGTTGGAACCCTGTCACGGGCTAT
ACCAGCAGGGGTCTGCCCACTGACCGGTTCATGTGGAGTGATGTCACGGGACTACAAGAATGTACCAAGG
CCGGCACAAAACCCCCATCGCTGCAGTGGACTTGGGTCTCTGACTGGTATGTGGATTTCAGTGTCCCCGG
AGGCACCGATCAGGAAGGATGGCAGTATGCCAGCGATTTCCCCGCCTCTTACCATGGGTACAAAACCATG
AAGGATTTTGTCAGGAGAAGGTGCTGGGCCAGAAAATGCAAGCTGGTGACCAGTGGGCCGTGGCTGGAGG
TGGCCCCCATCACCCTCAGCGACGTGTCCATCATCCCAGAGAGTGCACATGCTGACGGGAGAGGGCACAA
TGTTGCACTATGGGCCGTCAGTGACAAGGGGGACGTCCTGTGCCGCCTGGGTGTGTCTGAACTCAACCCC
GCGGGCTCCTCCTGGCTGCATGTTGGCACTGACCAGCCCTTCGCCTCTGTCTCCATCGGAGCCTGCTATC
AGGTGTGGGCTGTGGCCAGGGATGGCTCTGCATTCTACCGGGGCTCCGTGTCTCCCTCCCAGCCAGCTGG
TGACTGCTGGTACCACATCCCCTCCCCTCCCAAGCAGAAGCTGACACAGGTGTCTGTGGGCCAGACATCC
GTTTATGCCTTGGACGAAAATGGGAACCTGTGGTACCGAGCAGGGATCACCCCCAGCTACCCGCAGGGCT
CCAGCTGGGAGCATGTATCCAACAATGTACGCAAAGTGTCTGTGGGACCCCTGGACCAGGTCTGGGTGAT
TGCCAACAAAGTCCAGGGGAGCCATGGCCTGAGCCGGGGGACGGTGTGTCGTCGCATGGGTGTCCAGCCT
CGGGAGCCCAAGGGACAGGGCTGGGACTATGGCATTGGCGGAGGCTGGGACCACATCTCTGTCCGGGCCA
ATGCCACCAGGGTCCCAAGGAACATGTCCAGGGATCGGGAGGCCCGCGGTCCAGGTCCTGTTTGCTGCTG
A

Translation (1166 aa):
MPTSVLWAVDLFGRVYTLSTAGQYWELCKDVQLEFKRVSAATQCCWGIAGDNQVYLYVCSSDVPIRHREE
AYENQRWNPMGGFCEKLLPSDRWPWSDVSGLQHRPLDGVALPSPHWEWESDWYVDENFGGEPTEKGGWTY
AMDFPATYTRDKKWNSCVRRRKWIRYRRYKSRDSWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLS
VWAVSLQGKVWYREDVSHPNPEGSSWSLVETPGEVVQISCGPHDLIWATLWEGQALVREGVCRNNPKGSY
WSMVEPPGSENGIMHVSAGVSVVWAITKDRKVWFRRGVNSHNPCGTSWIEMVGEMTMVNVGLNDQVWGIS
CEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRSHSGSSSSLLSAGCFFGDEVRGSGTESAPSDTDASLE
VERQGPEQPLPKEALDNSTNLKGSLSKGHETSGNTDHSTENACLTEGKEKAPETSRSDECRGPASTPAEL
PWTNIDLKEPKKVSNQPAAGFPETAGLSSLGLFPMGMEEPYGADDHPLWAWVSGGACAVEAGSTLKWFTI
QSGLSPSVQTLSLSITPAQTAAWRKQIFQQLTERTKRELESFRHYEQAVEQSVWVKTGALQWWCDWKPHK
WVDVRVALEQFTGHDGARDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEAKHSFALYTPERTRQRWPV
RLAAATEQDMNDWLALLSLSCCESRKVHGRPSPQAIWSVTCKGDIFVSEPSPDLEARERLLPCDQMFWRQ
MGGHLRIIEANSRGVVWGIGYDHTAWVYTGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQRWNPVTGY
TSRGLPTDRFMWSDVTGLQECTKAGTKPPSLQWTWVSDWYVDFSVPGGTDQEGWQYASDFPASYHGYKTM
KDFVRRRCWARKCKLVTSGPWLEVAPITLSDVSIIPESAHADGRGHNVALWAVSDKGDVLCRLGVSELNP
AGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQPAGDCWYHIPSPPKQKLTQVSVGQTS
VYALDENGNLWYRAGITPSYPQGSSWEHVSNNVRKVSVGPLDQVWVIANKVQGSHGLSRGTVCRRMGVQP
REPKGQGWDYGIGGGWDHISVRANATRVPRNMSRDREARGPGPVCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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