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Report for CCDS24541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24541.1 Public Mus musculus 11 Spdl1 23 108 98 CCDS HistoryNCBI Gene:70385Re-query CCDS DB by CCDS ID:24541.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093191.2 ENSMUSP00000090882.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093191.2Link to Ensembl Protein Viewer:ENSMUSP00000090882.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093191Re-query CCDS DB by Protein ID:ENSMUSP00000090882
Original member Current member NCBI NM_027411.2 NP_081687.2 Accepted alive Link to Nucleotide Sequence:NM_027411.2Link to Protein Sequence:NP_081687.2Re-query CCDS DB by Nucleotide ID:NM_027411Re-query CCDS DB by Protein ID:NP_081687Link to BLAST:NP_081687.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081687.2 608 Q923A2 608 100% 0 0

Chromosomal Locations for CCDS 24541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34809695 34809842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34813326 34813674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34819123 34819310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34819778 34819887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34820890 34821030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34822181 34822291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34822374 34822472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34822560 34822709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34823330 34823527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34825363 34825539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34830725 34830880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGAGGCAGATATCACAAATCTTCGGAACAAACTCAAAGAGTGTGAAGACGAGCGACTGAAAGCTGCAC
ACTATGGCCTACAGCTCTTGGAGAGGCAGACGGAACTGCAGAGCCAACTGGATAAATGTCATGAAGAAAT
GATGATCACAGCAGAGAAATACAACCAAGAGAAGCATGCCCTTCAAAGAGAAGTGGAGCTCAAGAGTCGG
ATGTTAGACAGCCTGAGCTGTGAGTGTGAAGCTCTGAAACAGCAGCAGAAGGCGCAGCTGGAGCAGCTAG
AGGTGCAGCTACATAGGAGCCACCGGCAGGAAGTGAGCGACCTGAAGAACAAGTTAGAAAATCTGAAAGT
GGAATTGGATGAAGCAAGGCTTGGCGAGAAGCAGCTGAAGCAGAAGCTGGATCTGCAGGGGGAACTTCTC
GCTCACAAGTCAGAAGAGCTCCGGCTCCTGTCTGAGCAGAGAGTGCTCAGTAGCATGTCTTCGGAGCTGC
TGGCTCTTGAGACTGAGCTGACGGCAGCGGAAGGTGTGAAGAATGCCCTCAAAGAAGAGGTGAATGAACT
GCAGTACAAACAAGAGCAGCTAGAATGTCTCAATACTTCCTTACTGCACCAGGTAGACAGGCTTAAAGAA
GAAAAAGAGGAGCGTGAGAGAGAAGCGGTCTCTTACTATAATGCCTTGGAGAAAGCTCGTGTAGAGAACC
AGGATCTTCAGGTACAGCTGGGTCACGCACTCCAGCAGGCGGCGGACCCCAATAGCAAAGGGAACTCGCT
GTTCGCAGAGGTGGAGGATCGAAGGGTGGCAATGGAACGCCAGCTCAACTTGATGAAAGACAAATACCAG
TCACTGAAGAAGCAAAATGCGTTCACCAGAGATCAGATGAACAAGATGAAGTTACAAATCTCCACATTGC
TGAGGATGAGGGGCTCGCAGACTGAGTTTGAACAGCAGGAGCGGTTGTTTGCCATGATAGAACAGAAGAA
TGGTGAAATAAAACACCTTTTAGGGGAAATTAATAAACTGGAGAAATTTAAGAACTTATATGAAAGTATG
GAATCGAGGCCTTCCACATCAGACACCGCTTGTGTGCTAGAAGACAGCACCTATTACTCAGATCTACTTC
AGCTGAAGCTTGATAAGCTAAACAAAGAAAATGAAAGCACAAAGGACGAGCTGTCCATCCAGAGGATGAA
GGCTTTATTTGAGAGCCAGCGGGCCCTGGATATTGAGCGGAAACTGTTTACAAATGAAAGACACCTGCAG
CTCTCAGAAAGTGAAAACATGAAACTGAGAGCGAAGCTAGATGAACTCAAGCTGAAGTATGAACCGGAAG
AGAGAATTGAAGTACCTGTACTCAAAAGGAGGCGCGAGGTGCTGCCATTGAATATAACCACGCCAGAAGA
AACAGAAGAAACAGCTGCTGCCAGTGCCACTGAGGATGGAGTTTCTAGACTCCCACCTCACAGGGAGGAG
GAATCCTGTCTTAATAGCTTAAAAGATAACACTGTGCAGTGGAAACAGCCAGCCTCTTCATGTGTGCAGC
CAGCCAGCCTCTCTCCTCATAAGAACCTGCATCTGGATACACAGCCGAAGAAGGAGAAGAAGTGTGTGAA
GCTTGTGGATAGTCCGGCCAACATTGAGGTCTTACATGAACAAAGTGGGAATACCCCCAATTCTCCCAGG
TTAACTGCAGAATCAAAGCTTCCAACAGAAGTGAAGGAAAGGATAGAAACTACAAGCAAATTGGGAAAAG
GAGCTTGTAAGAAATCACACAACATCATATATGTGTCCTCAAAGTCAGCCCCAGAAACGCAGTGCTCACA
GCAGTAG

Translation (608 aa):
MEADITNLRNKLKECEDERLKAAHYGLQLLERQTELQSQLDKCHEEMMITAEKYNQEKHALQREVELKSR
MLDSLSCECEALKQQQKAQLEQLEVQLHRSHRQEVSDLKNKLENLKVELDEARLGEKQLKQKLDLQGELL
AHKSEELRLLSEQRVLSSMSSELLALETELTAAEGVKNALKEEVNELQYKQEQLECLNTSLLHQVDRLKE
EKEEREREAVSYYNALEKARVENQDLQVQLGHALQQAADPNSKGNSLFAEVEDRRVAMERQLNLMKDKYQ
SLKKQNAFTRDQMNKMKLQISTLLRMRGSQTEFEQQERLFAMIEQKNGEIKHLLGEINKLEKFKNLYESM
ESRPSTSDTACVLEDSTYYSDLLQLKLDKLNKENESTKDELSIQRMKALFESQRALDIERKLFTNERHLQ
LSESENMKLRAKLDELKLKYEPEERIEVPVLKRRREVLPLNITTPEETEETAAASATEDGVSRLPPHREE
ESCLNSLKDNTVQWKQPASSCVQPASLSPHKNLHLDTQPKKEKKCVKLVDSPANIEVLHEQSGNTPNSPR
LTAESKLPTEVKERIETTSKLGKGACKKSHNIIYVSSKSAPETQCSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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