NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25168.1 Public Mus musculus 11 Taf15 23 108 98 CCDS HistoryNCBI Gene:70439Re-query CCDS DB by CCDS ID:25168.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021018.10 ENSMUSP00000021018.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021018.10Link to Ensembl Protein Viewer:ENSMUSP00000021018.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021018Re-query CCDS DB by Protein ID:ENSMUSP00000021018
Original member Current member NCBI NM_027427.3 NP_081703.1 Accepted alive Link to Nucleotide Sequence:NM_027427.3Link to Protein Sequence:NP_081703.1Re-query CCDS DB by Nucleotide ID:NM_027427Re-query CCDS DB by Protein ID:NP_081703Link to BLAST:NP_081703.1

Chromosomal Locations for CCDS 25168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83473200 83473206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83481934 83481973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83484651 83484702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83484810 83484894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83484977 83485079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83487223 83487413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83488925 83489045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83497262 83497296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83497894 83497926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83499073 83499182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83501115 83501244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83502760 83502852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83504246 83504327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83504428 83504516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83504642 83505104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83506418 83506457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGTCGGATTCTGGAAGTTACAGTCAGTCTGGGGGTGAGCAGCAAAGTTATTCTTCTTATGGAAATCAAG
GCAGTCAAGGCTATGGACAAACACCACAAGGTTATTCTGGCTATGGGCAAACGACTGATTCTTCGTATGG
ACAAAACTATGGTGGTTACTCCGGTTATGGACAAAATCAATCAGGTTATTCACAGTCGTATGGTAGTTAT
GAGAATCAAAAGCAGAGTTCATATGGCCAGCAATCATACAATAACCAGGGACAACAAAACACGGAGTCAT
CAGGAGGTCAAGGTGGAAGAGCACCTTCATATGGCCAGTCAGACTATGGTCAGCAAGATTCTTATGACCA
GCAGTCAGGTTATGATCAGCATCAAGGCTCATATGATGAGCAGTCCAATTATCAGCAACATGATTCCTAT
AATCAAAACCAACAGTCTTACCATTCACAAAGGGAAAACTACAGCCACCACACACAAGATGACCGTCGTG
ATGTGAGTAGGTATGGAGAAGATAATAGAGGATATGGCGGGTCACAGGGAGGAGGTAGAGGGCGTGGGGG
ATATGACAAGGATGGAAGAGGTCCTATGACAGGATCAAGTGGTGGTGACCGCGGTGGCTTCAAAAATTTT
GGTGGTCACAGGGATTATGGACCCAGACCAGATGCTGATTCAGAGTCTGATAATTCAGATAACAACACAA
TCTTTGTGCAAGGACTTGGGGAGGGTGTGTCTACAGATCAAGTGGGAGAGTTCTTTAAGCAAATAGGAAT
TATCAAGACTAACAAAAAGACTGGAAAACCAATGATAAATCTTTACACAGACAAAGACACAGGAAAGCCA
AAAGGGGAAGCAACAGTGTCATTTGATGACCCTCCATCAGCTAAGGCAGCCATTGATTGGTTTGATGGAA
AAGAATTCCATGGAAACATCATAAAAGTGTCATTTGCCACTAGAAGGCCTGAATTTATGAGAGGTGGTGG
AAGTGGAGGTGGACGCCGAGGCCGTGGAGGATATAGAGGCCGTGGAGGTTTTCAGGGGCGAGGTGGAGAC
CCCAAGAATGGGGACTGGGTTTGCCCTAATCCGTCATGTGGAAATATGAACTTTGCTCGAAGAAACTCCT
GTAATCAGTGCAATGAGCCTAGACCAGAGGACTCACGTCCCTCAGGGGGAGATTTCCGGGGGAGAGGCTA
TGGTGGAGAAAGGGGCTACAGAGGTCGTGGGGGCAGAGGTGGAGACCGAGGTGGCTATGGTGGAGACAGA
AGTGGGGGAGGTTATGGTGGAGACAGGAGTGGGGGTGGCTATGGTGGGGATAGAGGAGGTAGCTATGGAG
GAGACAGAGGTGGTTATGGTGGGGACCGAGGAGGCAGCTATGGAGGAGACCGAGGTGGCTACGGAGGAGA
CAGAGGTGGCTATGGAGGAGACAGAGGTGGCTATGGAGGTGATCGAGGAGGCTATGGAGGTGATCGAGGT
GGATATGGAGGAGACCGCAGCCGGGGGGCCTATGGAGGAGACCGTGGTGGTAGTGGTAGTGGCAGTGGAG
GCTACGGTGGAGACAGAAGTGGAGGCTACGGTGGAGACCGAAGTGGTGGCTACGGAGGAGACCGAGGTGG
CTATGGAGGCAAAATGGGAGGAAGAAACGACTACAGAAATGATCAGCGCAACCGACCATACTGA

Translation (557 aa):
MSDSGSYSQSGGEQQSYSSYGNQGSQGYGQTPQGYSGYGQTTDSSYGQNYGGYSGYGQNQSGYSQSYGSY
ENQKQSSYGQQSYNNQGQQNTESSGGQGGRAPSYGQSDYGQQDSYDQQSGYDQHQGSYDEQSNYQQHDSY
NQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNF
GGHRDYGPRPDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKP
KGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGD
PKNGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDR
SGGGYGGDRSGGGYGGDRGGSYGGDRGGYGGDRGGSYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRG
GYGGDRSRGAYGGDRGGSGSGSGGYGGDRSGGYGGDRSGGYGGDRGGYGGKMGGRNDYRNDQRNRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH