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Report for CCDS16724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16724.1 Public Mus musculus 2 Ckap2l 23 108 98 CCDS HistoryNCBI Gene:70466Re-query CCDS DB by CCDS ID:16724.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16724.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052708.6 ENSMUSP00000056145.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052708.6Link to Ensembl Protein Viewer:ENSMUSP00000056145.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052708Re-query CCDS DB by Protein ID:ENSMUSP00000056145
Original member Current member NCBI NM_181589.3 NP_853620.1 Accepted alive Link to Nucleotide Sequence:NM_181589.3Link to Protein Sequence:NP_853620.1Re-query CCDS DB by Nucleotide ID:NM_181589Re-query CCDS DB by Protein ID:NP_853620Link to BLAST:NP_853620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853620.1 745 Q7TS74-1 745 100% 0 0

Chromosomal Locations for CCDS 16724.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129269038 129269263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129270575 129270761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129272497 129272557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129275490 129275645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129281892 129282099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129284857 129286100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129290958 129291009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129296314 129296380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129297105 129297141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGGTGGGGCCCGGCCCCACTGCCAGCGCAGCCGCGGAAGAACGGTGGCAGAAGCTCCAGGAGTACCTGG
CAGCCAAGGGAAAGCTAAAGGACCCCAACGCCAAGCCTTATCTAAAAGCCAAGAATATCTGCCCCAAACC
ACCACCATCTAAATATACTCCTGGACCTAAAAAAGATGTTTCCAATCATGTTTTGCCTAGCAAAACTACA
AGACCCATCAACATTAAATTCCAGACTAAACCAGCCAGTATCACAGCATCCCAGAAGCCAGAGTCGAAGC
CACCAAAACTTCCAAGCAGAGGACTCACGTCAAGATGTTTTTCTTCTAACACAGACTGTAAACAGTCCAG
CAAGCCTCAGCAGCAACCTAGAGCAGTGTCATTCACTGCAGGACTGTCAAGAAACCCCAGGCAGTGCCCT
GATATACAGGAACTAAAAACCAAACAGCAACAGCAAGCACATGGAGGAAATGCTAAATGTACACATCCCG
AGACTAACACCCACGCTGCAAAGCAACCTGTGGATGGCTTTCCAGATGAAACAAACAAAGAAAACTTGCC
CCAGGCCCTGCCAAAACCTGAGAAGCCAGATCCTGAGTTACATTCTATAAGAAAGCCAAATACTGGCTCT
TCTAATCAAACTCAGAAAGGTCTGGCTCCTAAACAGATCTTGAGCAAAAGTTCAGTTACTCAGACTGCTC
TGAAAGACAGAGCTAACAAACAGTTCATTCGAAACACACAAATCAGAACTCAAGCAGTGAAGTCTCGGCC
ACGCCCTACAGTTGCAGATTCTACACGACCAAGAGAAAAACCCCCACAAACAGCTCCCTCTCATTCCGTT
CCAGCCCATAATAAGACTCAGACATCAAAGAAACCAATGACCAAGAACACACAGGACATAACGGTTAACA
GGGTTAGATACGGAAAACCAAATGAAACTAAGATAGAGTCATGCCCTGCTACTGAACAGAAAGTAAAACA
CACTAAACCTAGTTCCCAACTCAATGTGCTTCAGGGAGGACATAACAGTAGACATCCCAACATGAGACAG
GATCAGAAGCCTGTACAGCCTCATCTTGGACCCCAGACGTCATGCGTTCTGCAAAAATCAAGAGCCATAA
GCCAGAGGCCTAATTTGACAGCTAGAAACTTTAATTCAGTCATCCCAAGCACGCCTAACATGAGAGCAAA
TAAAACACTTAACAATAAGTACAATAACATCTTTCAACAAAAGGCACAGACATTGGACTCCAAGTTCAGA
AAGTTTCCTCCCCAGAGCCATTTTTTGAACAAGACTGCTCCCAGGACTCAAGCCAGTACAGCAGCCGCAA
GTAGGAAGGGAGCCCCAAGTGCGACCCAGACTCACCCACATGGTAAAAAACCAGAAGGAGAGGATCGGAG
AAAACAGCTGGAAGAATGGCAGAAATCCAAAGGGAAAACCTATAAACGACCTCCCATGAAATTTAAAACA
AAAAGAAAAGTCATAGAGGAAATGAACACTTCCTTCTGGAAGAGCATTGAAAGAGAAGAAGAAGAAAAGA
AAGCTCAGCTGGAGCTGTCCAAGAAAATCGACAGCACTCTGACAGAGTGTCTGAGGCTCATTGAAGAGGG
TGTACTTCCTAATGAAATATTCACCATAGTATCCAGTATTCCTGAGGCTGAAAAATTTGCCAAGTTCTGG
GTGTGCAAAGCAAAGTTACTGGCAAGCAAAGGCACCTTTGATGCTATTGGACTATACGAAGAGGCCATTC
AGAACGGGGCAACACCAGTACAGGAGCTGCAGGAAGTTCTGAACGTTCTACAAGACCCATGCAGGAGCAC
AGAAGCAGTAACCTCTGACACCTCAGCTGCTGGAACTAATACCACATCTGCAGAGGAGCTGGCCAAGGAG
GAATCTGAGCAGCCTTGCCCATCTCTAACAGAAATGGAGCCTATTGCAGCAGCAGCACCGCGGATACCTG
TTTCAGAGTGGGATAACCATGGTATCAAATTACAGGTTGCTCCGATCCCTAGAATATGCGGGATGCCAGA
AGTGCAAGACATGAAGCTTATCACTCCCGTGAGGCGCTCAGCCAGGATCGAGCGCACGGTGGCTCGCTAC
CCAGAAATGCTGCAGGAGCATGATGTGGTGGTGGCTTCTCTTAATGAGCTACTGGAAGTGGACAAAACAG
AGTGTTTCATCTTCCGTGAAAATGAGGCTTTGCCTGTGACACTGGGCTTTGAAGTCCTTGAATCATGA

Translation (745 aa):
MVGPGPTASAAAEERWQKLQEYLAAKGKLKDPNAKPYLKAKNICPKPPPSKYTPGPKKDVSNHVLPSKTT
RPINIKFQTKPASITASQKPESKPPKLPSRGLTSRCFSSNTDCKQSSKPQQQPRAVSFTAGLSRNPRQCP
DIQELKTKQQQQAHGGNAKCTHPETNTHAAKQPVDGFPDETNKENLPQALPKPEKPDPELHSIRKPNTGS
SNQTQKGLAPKQILSKSSVTQTALKDRANKQFIRNTQIRTQAVKSRPRPTVADSTRPREKPPQTAPSHSV
PAHNKTQTSKKPMTKNTQDITVNRVRYGKPNETKIESCPATEQKVKHTKPSSQLNVLQGGHNSRHPNMRQ
DQKPVQPHLGPQTSCVLQKSRAISQRPNLTARNFNSVIPSTPNMRANKTLNNKYNNIFQQKAQTLDSKFR
KFPPQSHFLNKTAPRTQASTAAASRKGAPSATQTHPHGKKPEGEDRRKQLEEWQKSKGKTYKRPPMKFKT
KRKVIEEMNTSFWKSIEREEEEKKAQLELSKKIDSTLTECLRLIEEGVLPNEIFTIVSSIPEAEKFAKFW
VCKAKLLASKGTFDAIGLYEEAIQNGATPVQELQEVLNVLQDPCRSTEAVTSDTSAAGTNTTSAEELAKE
ESEQPCPSLTEMEPIAAAAPRIPVSEWDNHGIKLQVAPIPRICGMPEVQDMKLITPVRRSARIERTVARY
PEMLQEHDVVVASLNELLEVDKTECFIFRENEALPVTLGFEVLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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