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Report for CCDS17672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17672.1 Public Mus musculus 3 Wars2 23 108 98 CCDS HistoryNCBI Gene:70560Re-query CCDS DB by CCDS ID:17672.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004343.6 ENSMUSP00000004343.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004343.6Link to Ensembl Protein Viewer:ENSMUSP00000004343.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000004343Re-query CCDS DB by Protein ID:ENSMUSP00000004343
Original member NCBI NM_027462.4 NP_081738.2 Updated not alive Link to Nucleotide Sequence:NM_027462.4Link to Protein Sequence:NP_081738.2Re-query CCDS DB by Nucleotide ID:NM_027462Re-query CCDS DB by Protein ID:NP_081738
Current member NCBI NM_027462.5 NP_081738.2 Accepted alive Link to Nucleotide Sequence:NM_027462.5Link to Protein Sequence:NP_081738.2Re-query CCDS DB by Nucleotide ID:NM_027462Re-query CCDS DB by Protein ID:NP_081738Link to BLAST:NP_081738.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081738.2 360 Q9CYK1 360 100% 0 0

Chromosomal Locations for CCDS 17672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 99141099 99141188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99187481 99187738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99204536 99204616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99205225 99205310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99214656 99214774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 99216459 99216907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGCGCTGTTCTCTGTGCGGAAGGCCCGTGAGTGCTGGCGCTTCATCCGGGCACTTCACAAAGGACCCG
CAGCAACTCTGGCTCCCCAGAAGGAGAGTGGAGAGCGAGTGTTTTCTGGCATTCAGCCTACAGGAATCCT
CCACCTGGGAAATTACCTTGGAGCCATCGAGAGCTGGGTGAACTTACAGGAGGAATATGACACAGTGATA
TACAGCATCGTGGACCTCCACTCCATCACTGTCCCCCAAGACCCCACCGTCCTCCAGCAGAGCATCCTGG
ACATGACTGCTGTGCTTCTTGCCTGTGGCATAAACCCAGAGAAAAGTATCCTTTTCCAGCAGTCTAAGGT
GTCTGAACACACTCAGTTAAGTTGGATCCTCACCTGCATGGTGAGACTGCCTCGATTGCAGCATTTACAC
CAGTGGAAGGCAAAGGCTGCGAAGCAGAAGCATGATGGGACCGTAGGCCTGCTCACATACCCTGTACTCC
AGGCAGCAGACATCCTGTGCTACAAGTCCACACACGTTCCTGTCGGGGAGGATCAAGTCCAGCACATGGA
ACTAGTTCAGGATCTAGCTCGAAGTTTCAACCAAAAGTATGGGGAGTTCTTTCCATTGCCCAAGTCCATT
CTCACATCCATGAAGAAAGTGAAATCTCTTCGAGACCCTTCTTCCAAGATGTCAAAATCGGACCCTGACA
AACTCGCCACTGTTCGAATAACAGACAGCCCAGAGGAGATTGTACAGAAATTCCGCAAGGCTGTGACAGA
CTTCACGTCAGAGGTCACCTACGAGCCGGACAGCAGAGCTGGTGTTTCCAACATGGTGGCGATCCACGCG
GCCGTGTCGGGCCTCTCGGTGGAGGAGGTGGTGCGCAGTAGCGCAGGCTTGGACACTGCACGCTACAAGC
TGCTAGTGGCCGATGCTGTGATTGAGAAATTTGCTCCAATCAGGAAGGAGATTGAGAAATTGAAAATGGA
TAAGGACCACTTAAGAAAGGTTTTACTTGTTGGATCTGCAAAAGCCAAAGAATTGGCCTCTCCTGTGTTC
GAGGAGGTGAAGAAGTTGGTGGGGATTCTGTAG

Translation (360 aa):
MALFSVRKARECWRFIRALHKGPAATLAPQKESGERVFSGIQPTGILHLGNYLGAIESWVNLQEEYDTVI
YSIVDLHSITVPQDPTVLQQSILDMTAVLLACGINPEKSILFQQSKVSEHTQLSWILTCMVRLPRLQHLH
QWKAKAAKQKHDGTVGLLTYPVLQAADILCYKSTHVPVGEDQVQHMELVQDLARSFNQKYGEFFPLPKSI
LTSMKKVKSLRDPSSKMSKSDPDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYEPDSRAGVSNMVAIHA
AVSGLSVEEVVRSSAGLDTARYKLLVADAVIEKFAPIRKEIEKLKMDKDHLRKVLLVGSAKAKELASPVF
EEVKKLVGIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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